Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19080 298 / 5e-96 metaxin-related (.1) AT3G14820 283 / 1e-89 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G75900 276 / 1e-86 EXL3 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G20120 276 / 4e-86 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G06990 268 / 8e-84 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G42170 268 / 2e-83 SGNH hydrolase-type esterase superfamily protein (.1) AT1G20132 263 / 1e-81 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G75890 259 / 2e-80 EXL2 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G58725 259 / 3e-80 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G59406 259 / 3e-80 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015535 [exp] 488 / 9e-170 AT2G19080 308 / 2e-104 metaxin-related (.1) Lus10028423 [exp] 402 / 2e-135 AT3G14820 317 / 7e-107 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10041877 [exp] 401 / 5e-135 AT3G14820 321 / 1e-108 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10028425 [exp] 407 / 5e-133 AT1G75900 333 / 8e-109 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10028424 [exp] 394 / 2e-132 AT3G14820 298 / 2e-99 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10014257 [exp] 375 / 3e-121 AT3G14820 282 / 1e-89 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10034540 [exp] 292 / 8e-93 AT1G75900 456 / 2e-161 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10003717 [exp] 292 / 1e-92 AT1G75900 458 / 3e-162 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10013572 [exp] 291 / 1e-92 AT1G75900 435 / 2e-153 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G145508 [exp] 336 / 1e-110 AT2G19080 322 / 2e-110 metaxin-related (.1) Potri.006G077100 [exp] 335 / 7e-110 AT2G19080 332 / 7e-114 metaxin-related (.1) Potri.002G018800 [exp] 309 / 9e-99 AT1G75900 415 / 2e-144 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G242800 [exp] 298 / 7e-95 AT1G75900 419 / 6e-147 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G205100 [exp] 257 / 6e-79 AT2G42990 492 / 2e-175 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G062000 [exp] 252 / 2e-77 AT5G45960 440 / 8e-155 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G061900 [exp] 245 / 8e-75 AT5G45960 405 / 4e-141 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.002G219700 [exp] 244 / 2e-74 AT2G42990 439 / 1e-154 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.014G160200 [exp] 239 / 7e-73 AT2G42990 437 / 3e-154 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.009G151000 [exp] 238 / 2e-72 AT5G22810 504 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10020010 pacid=23156239 polypeptide=Lus10020010 locus=Lus10020010.g ID=Lus10020010.BGIv1.0 annot-version=v1.0 ATGGCTAAGGTTAATATTGTCATTGTTGGCTTCCTACTGACTCTGCTTCTGATGATCAATAGCTCGACAACAGCATCATCATCATCGTCAGTTCCAGCAG TGTTTGTGCTTGGGGACTCGTTACTGGATACCGGCAACAACAATTATATCCTAACCATTGTGAAGAGCAACGTCCCTCCTTACGGCAGAAACTTCCCCGG CCATATTCCCACCGGAAGGCCCAGCAACGGAAGAGGAGTCCCTGACTTCATCGTTGAAGCTTTTGGGGTGAAAAAGCTGCTACCACCTTATTTGGATCCA ACATTGGACATCCAGCAACTCCTTACTGGTGTCTCCTTCGCTTCTGCTGGTAGTGGTTACGACCCCCTCACTTTCGAGACATCTAACACAATATCACCAG ATGCACAGCTAGGGATGCTGAGAGAGTACATACAGAGAATGAATGAAACAGTTGGAGCAGAGAGAACTAGTTCCATTGTATCAACAAGTGCATACTTTAC CTTCTCCGGAAGCAACGACATCTCCATCACGTACCCTCCCCTCCGCTCCCACCAATTCGACATCGGTTCTTACACCGATCTATTGGTCACTCTCGCTGTT GATTTTCACAAGAAACTGTATGAAGTGGGAGCAAGAAAGATGGGAGTGATGAGCTTACCTCCAACAGGGTGCCTCCCAACAATTCGAACAATAGATGGGG GAATTGAGAGGAAGTGTTCAGAGAGTATGAATGAAGGAGTCAAGCTTTTTAACTCTAAACTGTCATCGGCCATTGATGAGCTTAATCGACAGCTTCCCGG AGCTAGGATTGTTCTAGTCGACCTCTACAACCCTGTTCTTTCCCTCATTCAGAACCCGGCTCCATACGGAATTGAAGAGGTGAAAAGAGGATATTGTGGG ACTGGGAATATAGAGGTGGGCATATTGTGCGCGCTACCGGGCACTTGCCTAGATGCATCAAAGTACTTGTTTTGGATTGGGCACATCCCACCGAGACGGC TTCCCGCATCCTTATCTCACAAGTATTGGTATCATTCATCAGCTCAACTTTCCTTCGCGACTGATACCACTGAACACGAAGAATCGGAGATGGAAGAATC GCACGATGGAGACTGGACACTCGTCGCTAGAAAACCCTATTTCGGCCTCCCTACTGCTTGCCCAGCTTGTTTGCCCCTTTACATCTACCTCAAATTCGCT CGCTTCCCTTTCAATTTGGAGTTCAATTCCGCTTACCCGGACTCAGATCAAATTCCTTACGTTGAGGCAGGAACTTACGTGGCTTATAACAATGAAAAAG GTGGGGTTATACAATGTATGAAACAGGATAGCGTTGTTGACTTAGATGCTGAATTTAGCTCCGACCCAGAATGGGTATCCATGAAAGCCATGATCAGCTC CTGGCTTGCTGATGCAATCACCTACGAGCTCTGGATTGGATCTGGCGATAGTTCTGCCATGAAGATTTATTATTCCGATCTTCCTTGGGTGATAGGAAAG GCTCTGTTTGTTAAGCAAGTGTATGATGTTAAGCAGCAACTTCATATAACTAAACAGAATGTCGAGCAGAGGGAATTAGAGCTTTATGATAGAGCAAAAA CAGCATACAGAGCTTTGTCAACAAAGTTGGGGACAGATGATTTTCTCTTCAGGAGCAGGCCGACAAGCTTGGACGCAGACCTTGTTGCACATGTGCTATT CACAGTTCAAGCGTTGCCTGAAGAATCAGCTCTCCGCACAGCTCTCTTGGAGCATGACAATCTCATAAAATATGCTGAAAAACATAACAATGATCTCCTC AAGTCTGGTCCATCAACTGCTTCTCTTCCACAATTCCCATCCCCGGTGTCATCACGTGCAAGTTCAAGCTCAAAATCAAAGAGGAAGCCTAAGAGGGAGG AAACGGAAGAGGAGAAAACTTTCAAAAGGAAGGCGAAATTCTTTCTGGGGGCCCAGCTGGTTGCAGTACTACTGTTTTTGTCTCTCTTGGGTAGTTCTAG CTCGTCGGAGATAGGCATTGACGAGGACGATGAAGATTATGAGTAA
AA sequence Show only first row Show all	>Lus10020010 pacid=23156239 polypeptide=Lus10020010 locus=Lus10020010.g ID=Lus10020010.BGIv1.0 annot-version=v1.0 MAKVNIVIVGFLLTLLLMINSSTTASSSSSVPAVFVLGDSLLDTGNNNYILTIVKSNVPPYGRNFPGHIPTGRPSNGRGVPDFIVEAFGVKKLLPPYLDP TLDIQQLLTGVSFASAGSGYDPLTFETSNTISPDAQLGMLREYIQRMNETVGAERTSSIVSTSAYFTFSGSNDISITYPPLRSHQFDIGSYTDLLVTLAV DFHKKLYEVGARKMGVMSLPPTGCLPTIRTIDGGIERKCSESMNEGVKLFNSKLSSAIDELNRQLPGARIVLVDLYNPVLSLIQNPAPYGIEEVKRGYCG TGNIEVGILCALPGTCLDASKYLFWIGHIPPRRLPASLSHKYWYHSSAQLSFATDTTEHEESEMEESHDGDWTLVARKPYFGLPTACPACLPLYIYLKFA RFPFNLEFNSAYPDSDQIPYVEAGTYVAYNNEKGGVIQCMKQDSVVDLDAEFSSDPEWVSMKAMISSWLADAITYELWIGSGDSSAMKIYYSDLPWVIGK ALFVKQVYDVKQQLHITKQNVEQRELELYDRAKTAYRALSTKLGTDDFLFRSRPTSLDADLVAHVLFTVQALPEESALRTALLEHDNLIKYAEKHNNDLL KSGPSTASLPQFPSPVSSRASSSSKSKRKPKREETEEEKTFKRKAKFFLGAQLVAVLLFLSLLGSSSSSEIGIDEDDEDYE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G19080			metaxin-related (.1)		Lus10020010 [exp]	0	1
AT2G19080			metaxin-related (.1)		Lus10015535 [exp]	1.0	0.8364
AT3G27430		PBB1	N-terminal nucleophile aminohy...		Lus10032102 [exp]	3.7	0.7984
AT2G05840		PAA2	20S proteasome subunit PAA2 (....		Lus10027669 [exp]	4.2	0.7935
AT5G05780		RPN8A, AE3, ATH...	ASYMMETRIC LEAVES ENHANCER 3, ...		Lus10035522 [exp]	6.3	0.7740
AT5G24170			Got1/Sft2-like vescicle transp...		Lus10019023 [exp]	11.5	0.7262
AT3G19420		PTEN2A, ATPEN2	phosphatase and TENsin homolog...		Lus10010265 [exp]	11.5	0.6407
AT1G04190		TPR3	tetratricopeptide repeat 3, Te...		Lus10041189 [exp]	14.8	0.7496
AT3G66654			Cyclophilin-like peptidyl-prol...		Lus10016265 [exp]	19.8	0.7205
AT1G30580			GTP binding (.1)		Lus10023261 [exp]	21.2	0.6917
AT5G35330		MBD2, MBD02, AT...	METHYL-CPG-BINDING DOMAIN PROT...		Lus10021593 [exp]	21.9	0.6994

Compare expression of checked genes

Lus10020010 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.