Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29940 415 / 2e-135 HD PRHA pathogenesis related homeodomain protein A (.1.2) AT3G19510 208 / 4e-58 HD HAT3.1 Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain (.1) AT3G01460 45 / 0.0002 MBD9, ATMBD9 methyl-CPG-binding domain 9 (.1) AT1G77250 44 / 0.0002 RING/FYVE/PHD-type zinc finger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015536 [exp] 953 / 0 AT4G29940 440 / 4e-144 pathogenesis related homeodomain protein A (.1.2) Lus10018741 [exp] 206 / 7e-57 AT3G19510 304 / 4e-92 Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain (.1) Lus10024826 [exp] 153 / 8e-39 AT3G19510 224 / 1e-62 Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain (.1) Lus10029733 [exp] 46 / 7e-05 AT1G77250 313 / 5e-100 RING/FYVE/PHD-type zinc finger family protein (.1) Lus10030864 [exp] 46 / 0.0001 AT3G01460 511 / 2e-152 methyl-CPG-binding domain 9 (.1) Lus10008495 [exp] 43 / 0.0009 AT1G63490 916 / 0.0 transcription factor jumonji (jmjC) domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G142400 [exp] 573 / 0 AT4G29940 461 / 4e-152 pathogenesis related homeodomain protein A (.1.2) Potri.006G075500 [exp] 552 / 0 AT4G29940 466 / 6e-154 pathogenesis related homeodomain protein A (.1.2) Potri.001G298400 [exp] 193 / 4e-52 AT3G19510 292 / 1e-86 Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain (.1) Potri.009G093000 [exp] 185 / 3e-49 AT3G19510 291 / 3e-86 Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain (.1) Potri.017G072460 [exp] 45 / 0.0002 AT3G01460 929 / 0.0 methyl-CPG-binding domain 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [flax] [poplar] zf-FYVE-PHD PF00628 [flax] [poplar] PHD PHD-finger
Representative CDS sequence Show only first row Show all	>Lus10020011 pacid=23156193 polypeptide=Lus10020011 locus=Lus10020011.g ID=Lus10020011.BGIv1.0 annot-version=v1.0 ATGTCCAATCCTTCCCTAAAGGCCATACGTTCAGTTATATCAAAGAAGAAAAAAGTTGGTCGCCCTTCAAGTAACCTGAGCAGGAAAGGTGCTAGGTCTA GAAAGTTGATTCGTGGTAAAAGTATGAACAAACAAGTTCATCAAAGTTCGTCAAAGAAGTCAGATTTATCAGAGACAAGGTGTGAGCCTGCATCAGCCAC CTATTCTGAGATAAATGATAAGAACGAGTCGAAGGGTACGAAAAGAAAATTCAAAAGGAGAACATTGACTGAAAAGAGAAAGCACAAGGAAGAGCTAGAT GAACCATCAAGGTTGCAGAGGAGAACAAGGTATTTGATGATTAGAATGAAGATGGAGCAGAACCTTATAGATGCTTACTCTGGTGAAGGATGGAAAGGAC ACAGTCGAGAGAAAATCAGGCCAGAGAAAGAACTCCTAAGAGCAAAAAAGCAGATTTTGAAGTGTAAACTTGGAATACGGGATGCAGTCCACCAGCTTGA TATGCTTAGTAACGTTGGATGCATTGAAGAGTCTGTTATGGCGGCAGATGGATCGGTCTCCCATGAACATATCTTCTGTGCAAAGTGCAAATCAAATGAA GTAGTCCGAGATAATGACATCATACTTTGTGACGGGACATGCAATTGTGCCTACCATCAGATGTGCCTTGAACCGCCACTCCACACTGAAAATATACCCC CTGGAGACCAAGGATGGTTTTGCAAGTTTTGCGAACGTCGAATGGAAATTATAGATTCCATGAATGCACATCTTGGAACCCGATTCTCCATGGCTTGCAA CTGGAAGGTTGATATATTCACCGAGGAGGCTGCTACTCCTGATGGTGGGAACATTTTAACTCTTGAAGAAGAATGGCCATCAGACGATTCTCAAGACGAT GACTATGATCCAGAAAGGAGGGAGAAGAGCATGAGTGGAGCAGGAACCGACAATCATGTGGCAGATTCTGCTAGCAGTTCCACTAGCTTAGGTTGGTCTT CAGATGATGAAGCTCTTCCTGAATCCAAAAGGTTACAATTGGAAGGAATGGACGTCAGAAGCCACTCGATTTATAGTAGCTTAGATTCCGAGGAAGTCAG TGATATTGAAATAGTTCATGGGCGCAGGCGGAGAAGAGCAGTTGACTATAGGAAGTTGTATGATGAGATGTTTGGAAAGGATGCTCCTGTAGCTGACCAG CTCAGTGAAGATGAAGACTGGGGTCCAAGCAAGAGGACAAGGAGGGCAAAGGAATCAGATGCTGCTAGTACCCTTATGAATCTCTACCAAAATGAAAAAA TCGGTGAGAAAGCTGAGATTGGGGAAGGTAAGAAGGAGGTTCCTCAAGATTCGCAGGTTAGAAGGGCACTCTCCAGAATTCCTCAAAGTGCAGTTGAGAA ACTTCGCCAAGCTTTTGAGGAAAATGAACTTCCTTCTAGGAAAGTTAAGCAGAAGCTTTCGGAGGAAATGGGTCTTGAACCTGGAAAGGTACGAACTTCT GTCTCTAGGTTCATAGCTCCTAGCGTAGTAAAGGTCAGCAAATGGTTTAAGAACGCTAGGTACATGGCATTGAAATCCAGAAAGGTGGACAAAACAACTG GGTCCAGTGATTCTACCCCTATGCTTTCTGAAGCCGCAGATGATGTAAAGAAGGGTGGTAGCGAGGGACCTGAAGTTGTAAATGATATTGAAACTGAACC CGGACTGCGGACCAGAAGAACTTCGGAACATGTCTCCACAATGACGAAACTATTATCCAAATACGAGGTAAAGGAAAATGATCCAGCGAAATCACAGGTT GGATATAGTGAAGTACTTATGAAGAATTATTCAGTCTTCTTTTTCCTTGTTTCATTTCTTCTGAAGTGTGGTTGCCTTGTTAACTTTTCTGATACCCTGA GTGAACGGATTAGGAGGTGGTTTAAACAGTTCTTGCTCCAATGTCTCAGGCTTTAG
AA sequence Show only first row Show all	>Lus10020011 pacid=23156193 polypeptide=Lus10020011 locus=Lus10020011.g ID=Lus10020011.BGIv1.0 annot-version=v1.0 MSNPSLKAIRSVISKKKKVGRPSSNLSRKGARSRKLIRGKSMNKQVHQSSSKKSDLSETRCEPASATYSEINDKNESKGTKRKFKRRTLTEKRKHKEELD EPSRLQRRTRYLMIRMKMEQNLIDAYSGEGWKGHSREKIRPEKELLRAKKQILKCKLGIRDAVHQLDMLSNVGCIEESVMAADGSVSHEHIFCAKCKSNE VVRDNDIILCDGTCNCAYHQMCLEPPLHTENIPPGDQGWFCKFCERRMEIIDSMNAHLGTRFSMACNWKVDIFTEEAATPDGGNILTLEEEWPSDDSQDD DYDPERREKSMSGAGTDNHVADSASSSTSLGWSSDDEALPESKRLQLEGMDVRSHSIYSSLDSEEVSDIEIVHGRRRRRAVDYRKLYDEMFGKDAPVADQ LSEDEDWGPSKRTRRAKESDAASTLMNLYQNEKIGEKAEIGEGKKEVPQDSQVRRALSRIPQSAVEKLRQAFEENELPSRKVKQKLSEEMGLEPGKVRTS VSRFIAPSVVKVSKWFKNARYMALKSRKVDKTTGSSDSTPMLSEAADDVKKGGSEGPEVVNDIETEPGLRTRRTSEHVSTMTKLLSKYEVKENDPAKSQV GYSEVLMKNYSVFFFLVSFLLKCGCLVNFSDTLSERIRRWFKQFLLQCLRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G29940	HD	PRHA	pathogenesis related homeodoma...		Lus10020011 [exp]	0	1
AT4G04970		ATGSL01, ATGSL1	GLUCAN SYNTHASE LIKE-1, GLUCAN...		Lus10032069 [exp]	7.7	0.8769
AT3G42860			zinc knuckle (CCHC-type) famil...		Lus10012985 [exp]	10.0	0.8737
AT1G02080			transcription regulators (.1.2...		Lus10024660 [exp]	14.1	0.8885
ATMG00510		ATMG00510.1, NA...	NADH dehydrogenase subunit 7 (...		Lus10009720 [exp]	17.2	0.8769
AT1G80550			Pentatricopeptide repeat (PPR)...		Lus10011439 [exp]	17.5	0.8308
ATMG00510		ATMG00510.1, NA...	NADH dehydrogenase subunit 7 (...		Lus10000459 [exp]	24.7	0.8766
AT3G18290		BTS, EMB2454	embryo defective 2454, BRUTUS,...		Lus10034346 [exp]	26.1	0.8585
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Lus10003433 [exp]	28.1	0.8177
AT1G43770			RING/FYVE/PHD zinc finger supe...		Lus10028603 [exp]	28.6	0.8339
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Lus10003427 [exp]	29.0	0.7965

Compare expression of checked genes

Lus10020011 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.