Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57180 113 / 2e-26 CIA2 chloroplast import apparatus 2 (.1.2.3) AT4G25990 110 / 2e-25 CIL CCT motif family protein (.1.2) AT2G19260 83 / 4e-16 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G14370 76 / 1e-14 CCT motif family protein (.1) AT1G07050 74 / 1e-14 CCT motif family protein (.1) AT1G25440 73 / 2e-13 CO COL16 B-box type zinc finger protein with CCT domain (.1) AT1G73870 73 / 3e-13 CO COL7 B-box type zinc finger protein with CCT domain (.1) AT1G68520 69 / 6e-12 CO COL6 B-box type zinc finger protein with CCT domain (.1) AT1G49130 64 / 9e-11 CO COL8 B-box type zinc finger protein with CCT domain (.1.2) AT4G14700 53 / 8e-07 ORC1, ATORC1A, ORC1A origin recognition complex 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015537 [exp] 598 / 0 AT2G19260 86 / 9e-18 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10015538 [exp] 329 / 6e-105 AT5G57180 130 / 8e-34 chloroplast import apparatus 2 (.1.2.3) Lus10025459 [exp] 98 / 8e-22 AT5G57180 138 / 2e-37 chloroplast import apparatus 2 (.1.2.3) Lus10015330 [exp] 87 / 4e-18 AT5G57180 136 / 1e-36 chloroplast import apparatus 2 (.1.2.3) Lus10020162 [exp] 80 / 2e-15 AT2G19260 156 / 1e-41 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10022311 [exp] 72 / 5e-13 AT5G14370 141 / 1e-38 CCT motif family protein (.1) Lus10014886 [exp] 69 / 6e-12 AT5G14370 152 / 3e-42 CCT motif family protein (.1) Lus10041449 [exp] 64 / 3e-10 AT1G25440 288 / 4e-93 B-box type zinc finger protein with CCT domain (.1) Lus10026238 [exp] 51 / 1e-06 AT5G24930 163 / 9e-48 CONSTANS-like 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G075400 [exp] 168 / 6e-43 AT2G19260 202 / 3e-55 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.018G142300 [exp] 160 / 9e-41 AT2G19260 205 / 5e-57 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.018G142100 [exp] 117 / 1e-27 AT5G57180 160 / 5e-44 chloroplast import apparatus 2 (.1.2.3) Potri.006G075200 [exp] 115 / 4e-27 AT5G57180 267 / 5e-85 chloroplast import apparatus 2 (.1.2.3) Potri.006G277400 [exp] 92 / 3e-19 AT2G19260 169 / 4e-46 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.001G281700 [exp] 78 / 7e-16 AT1G07050 138 / 8e-41 CCT motif family protein (.1) Potri.010G125100 [exp] 70 / 2e-12 AT1G25440 311 / 3e-102 B-box type zinc finger protein with CCT domain (.1) Potri.001G339200 [exp] 68 / 5e-12 AT5G14370 174 / 5e-52 CCT motif family protein (.1) Potri.009G077100 [exp] 65 / 7e-12 AT1G07050 119 / 3e-34 CCT motif family protein (.1) Potri.015G054600 [exp] 68 / 1e-11 AT1G25440 272 / 2e-87 B-box type zinc finger protein with CCT domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [flax] [poplar] zf-FYVE-PHD PF00628 [flax] [poplar] PHD PHD-finger CL0281 [flax] [poplar] CCT PF06203 [flax] [poplar] CCT CCT motif
Representative CDS sequence Show only first row Show all	>Lus10020012 pacid=23156172 polypeptide=Lus10020012 locus=Lus10020012.g ID=Lus10020012.BGIv1.0 annot-version=v1.0 ATGTCATCACCATCTCCTTATCTGGGCAGGGGAGGAGGCAGAGCATACGGATTATTGGAGGTGGAAATAGCGGTGAAATCAACCACTTCCTTCTCCTCCA CCATAACCAATTCTTCATCCTCTTCCCCATCTTCAACTCTCTCGGAATCAAGCCCATTGGCAATCTCCACCAGGAAAACACGCTCCTCCACGCGCCGAAA GCGGCCGAACCAGACTTACAATGAAGCCGCCGCACTCCTCTCCACCGCATACCCCAAAATCTTCTCCCTCCCTGCTCCACTACCAAACCACCCTCTCCAC TCTCTCCCTCTCGATTCCTCCGATTTGCTGCTTCCCCTCCGCGCCCTCGATTCCGCCACCAGCTTCCTCCCAATTCGAGAAGAAGAGCCCAAATTGGCGG CGGAGGTTAGCTCCCGGTGGCAGAACATCGCCACCGGGAACTGGAAAGAGAAAGCAGAGGAGGAGGATGAGGAGGATGATTTCGACGCAGAATCGATGCT GGACGAGGAATTCGAGCAAGTAGGGATCGATAGCATAATGGGTGGAACTGCAGTGATGAATAATGAAGAATCAGTAATCAATCACAACCTTCTCAATTAT CATCATCCTCATCAACATCAACAAACGAGCTTTGTTTACGGGTACCCGCCAGGATTTCATCATCCGTACTGGTCTGGCGGAGATGTTCGTAATAATAATA ATAATAATAATAATAACAGAGCGTTTCGTAGATCCGTGGATGATTGGTGGAACTACCCAGTGGTGGACGTGCTCCAAATCTCTCCCAGGCTGCATTCGAT TTCAAACAACCAGATGACGGTGACGACGAATGTAGACGGGTGTGGTGAATTTGAAGAGAAGACGAAACAGAGCACTACTACTACTTCAGGGGAGAAAACT GATAAAAATGGGAACAGCAAGCAGAAGAAGAAGAAGCTGAAGAAGAAGAAAATTGCGAAATTGGGCGGAGAAGAGGTGAAGGAGGCGGAAGAGACTAAAG AAGATTCCAATTTCGGGAGGAATTTGCTGAAACTGAACTACGATGAGGTACTCAAGGAGTGGTCGGGAAAAGGGTCGCCGTTCCCGGAGGAAATTGCCGG AGGTGCATTTCTCGAAGACGGCTGTGATGCTTCGGCGATAGCGGCTCAGATCGACTTGTTCTCGTCAGACGGAAATAGCGGCGGAGGAGGAGGAGTGAGG GAAGCGAGTGTGTTAAGGTACAAAGAAAAGCGGCTGAGTAGGTTGTTCTCCAAAAAGATACGATATCAAGTCCGCAAAGTCAACGCCGATCAACGTCCCC GAATGAAGGCAGAGTCCCAAATCTTTGTTTTATTATTAGGGAGCCCGAACCAGAGAGGACTCCAACTTTCGCTTGGCTTCTTCTTCTCTCGTTGCTGCTC GCCGCCGCTCAACTCCAAGCAGTCAAACTCTTTGTTATTCCCGTCGTCTCCATCTCCTCTTTGTGATCCTCATTCAGGAACTAGAAAAAGGGACAGCACA TCCCTTTCTACTGGCATTTGTCCCAATGCTATTAACCTTCCACGTGTGTACGAAAGAAGAAGAAAGCTTTCCCAGCGAGCTGTCTCTTCTTCTGTTGCAC TTGTGTACAAAAGAAGAAGGAAACTACCCCGGCCAGACACGGCTGCTGTCTCCTCAGCAGACACTCTTGCAGCAACTAGGCAAAAGAGACGTTCTTCCCT TTTGATTGGACTTGTGTACAAAAGAAGAAGGAAGCTTTCCCAGCGGGACTCAGCCACTTTCTCGTTTGTAGAGTCCCTCCGGAGAGCTAGGACTTGTGTA CAAAAGAAGAAGGTTGTTTCATACACGGAAGGTACCAACCACAGTGTGCATGAGAGTTGCTCATCATCAAGATCGAATGTAGACTTCATTTCGGCATCCA ATAATAAAGAAGTAGATGATACAGGTGAGTGCTCTTCTTCCGCGGTACCTCCTTCAGAGACCTTGGGAAAAGATGCATCAGAGAGGGATATATGCATCTC CATTCTTGTAAGGCATGGAGTTATGAGAAGAGTATGGCCTTGTAGCAGTCGTACTCCTGGTGTTAGAATTGGCGGCCATGGTTGTAAGTTGTGCAACGTT TGTTCTCGTTCGGACTCTACAGGAAGGATGTTGATTTGTGATGATTGTGAGGAGGCCTTTCACTTGTCTTGCTGCAGTCCTCAGATAAAAGCAATCCCTG TTGATAAGTGGCTTTGTCATTGGTGTTTGAGGAAGAACCGTAAGGCTGTCAAGGAAACCAGTAAATGTCATAATATCAGTGATGGAGCAGCTGGGTCTTT GAAAGCTGTTTCTGCTAGTGGTGCACGTCGTATTCAACTGATGCTGACGGACACCAAGCCCTATACTACTGGTGTTCGTGTCGGTAAAGGTTTTCAAGCA GAAGTTCCAGATTGGTCAGGTCCAGCACTTTAA
AA sequence Show only first row Show all	>Lus10020012 pacid=23156172 polypeptide=Lus10020012 locus=Lus10020012.g ID=Lus10020012.BGIv1.0 annot-version=v1.0 MSSPSPYLGRGGGRAYGLLEVEIAVKSTTSFSSTITNSSSSSPSSTLSESSPLAISTRKTRSSTRRKRPNQTYNEAAALLSTAYPKIFSLPAPLPNHPLH SLPLDSSDLLLPLRALDSATSFLPIREEEPKLAAEVSSRWQNIATGNWKEKAEEEDEEDDFDAESMLDEEFEQVGIDSIMGGTAVMNNEESVINHNLLNY HHPHQHQQTSFVYGYPPGFHHPYWSGGDVRNNNNNNNNNRAFRRSVDDWWNYPVVDVLQISPRLHSISNNQMTVTTNVDGCGEFEEKTKQSTTTTSGEKT DKNGNSKQKKKKLKKKKIAKLGGEEVKEAEETKEDSNFGRNLLKLNYDEVLKEWSGKGSPFPEEIAGGAFLEDGCDASAIAAQIDLFSSDGNSGGGGGVR EASVLRYKEKRLSRLFSKKIRYQVRKVNADQRPRMKAESQIFVLLLGSPNQRGLQLSLGFFFSRCCSPPLNSKQSNSLLFPSSPSPLCDPHSGTRKRDST SLSTGICPNAINLPRVYERRRKLSQRAVSSSVALVYKRRRKLPRPDTAAVSSADTLAATRQKRRSSLLIGLVYKRRRKLSQRDSATFSFVESLRRARTCV QKKKVVSYTEGTNHSVHESCSSSRSNVDFISASNNKEVDDTGECSSSAVPPSETLGKDASERDICISILVRHGVMRRVWPCSSRTPGVRIGGHGCKLCNV CSRSDSTGRMLICDDCEEAFHLSCCSPQIKAIPVDKWLCHWCLRKNRKAVKETSKCHNISDGAAGSLKAVSASGARRIQLMLTDTKPYTTGVRVGKGFQA EVPDWSGPAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57180		CIA2	chloroplast import apparatus 2...		Lus10020012 [exp]	0	1
AT3G23530			Cyclopropane-fatty-acyl-phosph...		Lus10023741 [exp]	5.7	0.8384
AT4G11780			unknown protein		Lus10024488 [exp]	8.0	0.8223
AT5G50250		CP31B	chloroplast RNA-binding protei...		Lus10017962 [exp]	10.7	0.8362
AT4G24175			unknown protein		Lus10013559 [exp]	13.6	0.8338
AT1G08470		SSL3	strictosidine synthase-like 3 ...		Lus10013370 [exp]	15.4	0.7832
AT5G17710		EMB1241	embryo defective 1241, Co-chap...		Lus10029654 [exp]	22.2	0.7812
AT5G52520		PRORS1, OVA6	PROLYL-TRNA SYNTHETASE 1, OVUL...		Lus10027506 [exp]	22.3	0.7775
AT4G38840			SAUR-like auxin-responsive pro...		Lus10008995 [exp]	27.5	0.7696
AT5G42250			Zinc-binding alcohol dehydroge...		Lus10023572 [exp]	27.7	0.7491
AT5G52440		HCF106	HIGH CHLOROPHYLL FLUORESCENCE ...		Lus10039254 [exp]	30.2	0.8038

Compare expression of checked genes

Lus10020012 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.