Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57160 1353 / 0 ATLIG4 DNA ligase IV (.1) AT1G66730 75 / 2e-13 AtLIG6 DNA LIGASE 6 (.1) AT1G08130 74 / 4e-13 ATLIG1 DNA ligase 1 (.1) AT1G49250 65 / 3e-10 ATP-dependent DNA ligase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016149 [exp] 76 / 1e-13 AT1G08130 1015 / 0.0 DNA ligase 1 (.1) Lus10017623 [exp] 63 / 1e-09 AT1G66730 1584 / 0.0 DNA LIGASE 6 (.1) Lus10021418 [exp] 57 / 7e-08 AT1G08130 1015 / 0.0 DNA ligase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G141900 [exp] 1441 / 0 AT5G57160 1372 / 0.0 DNA ligase IV (.1) Potri.004G094200 [exp] 79 / 2e-14 AT1G66730 1656 / 0.0 DNA LIGASE 6 (.1) Potri.009G005900 [exp] 77 / 7e-14 AT1G08130 1073 / 0.0 DNA ligase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0459 [flax] [poplar] BRCT-like PF00533 [flax] [poplar] BRCT BRCA1 C Terminus (BRCT) domain CL0021 [flax] [poplar] OB PF04679 [flax] [poplar] DNA_ligase_A_C ATP dependent DNA ligase C terminal region CL0078 [flax] [poplar] DNA_ligase PF01068 [flax] [poplar] DNA_ligase_A_M ATP dependent DNA ligase domain CL0078 [flax] [poplar] PF04675 [flax] [poplar] DNA_ligase_A_N DNA ligase N terminus
Representative CDS sequence Show only first row Show all	>Lus10020013 pacid=23156140 polypeptide=Lus10020013 locus=Lus10020013.g ID=Lus10020013.BGIv1.0 annot-version=v1.0 ATGACAGAGGAAACGAAGTTCAGCGTGATGGTGAGCTTGTTCGATTGGATACAGAAGAGCAAATACTCTGCCAAGAAGCGCACCAAGTTCCGCAAGTTCC TCGACACTTTCTGCAAACCTAGCGACTACTTCACCGCAGTCCGGTTGATTCTCCCAGGGCTCGATCGAGAGAGAGGTTCGTACGGCCTAAAGGAATCGGT GCTGGCCACTTGCCTAGTTGACGCCCTAGGCATGTCCAGAGACTCCCCCGACGCCCTTCGCCTGGTTAATTGGCGGAAAGGCGGCGCCAAGACCGGCGTC AATGCTGGCAACTTCGCTCTCGTTGCTTCCGAAGTCCTTCAGCGCAGGCAAAGTATGGTCTCCGGCGGACTCACCATCAAGGAGCTTAACGACTTGCTCG ATCGTCTGGCTTCTGGTGAAAACAGGTCAGAGAAGATTTCCATTCTCTCTACTCTGATTAAGAAGACTAATGCTCAAGAAATGAAGTGGATTATCATGAT TATTCTAAAAGATTTGAAGCTGGGATTGAGTGAGAAAACTATATTTCACGAATTCCATCCAGATGCAGAAGACTTATTTAACGTCACTTGTGACTTGAAG TTGGTCTGCGAAAAATTGAAAGACCGGCATCAAAGGCATAAGCGCCAGGATATCGAAGTTGGCAAGGCAGTACGCCCTCAACTAGCTATGCGAATTTCGG ATGCTCAGGCTGCATGGAAAAAGGTTTGCCGGTGCTGTCTTCATGGTAAGGAAGTGATCATGGAATGTAAGTTTGATGGTGATCGTATCCAAATCCATAA GAATGGCACCGAGATACACTTTTTCTCAAGGAACTTTCTTGATCACTCTGAATATGAACACGGAATGTCAAACATTATTCAGCAATGTGTTTTGGCTGAC AGGTGCATACTTGATGGTGAAATGTTAGTATGGGACAATTCCTTGAATCGATTTGCAGAGTTTGGTTCAAATCAGGAAATAGCAAAGGCAGCAAAAAATG GACTTGATGGACAGAAACAGGTGTGCCTTTGGATTCACCTTTCTCGCGAAAGGCATGAACTCCTTCGTAAAACGGTGCAGCCTGTCAAGGGTCGTTTAGA GATCTTAGTACCTAGTGGCGGCCTGAATAATCATTGTTCCCCTGGGGAACCTTGTTGCTCACTTATTGCTCATAACCTGGATGATGTTGAAAACTTCTTC AAGCAAATAGTTGAGAATAGAGATGAAGGGATTGTGTTAAAAGATCTTGCCTCCAAATGGGAACCAGGGGATCGTAGTGGAAAGTGGTTGAAACTTAAAC CTGATTACATCCGTGCTGGTTCAGATTTAGATGTTCTTATCATTGGAGGATACTATGGCTCTGGACGACGTGGAGGGGAGGTGGCTCAATTCCTGGTAGG TCTAGCAGAACAGCCTTCGGCAAATACATACCCGAAACGAGTTGGTACTGGGTTATCGGATGATGAACTAAATGCTGTTGTGACAAAGTTGAAGCCGTAT TTTAGGAAATATGATTATCCTAGAAAAGCACCTCCAAGTTTCTACAAAGTTACCAATAATTCTAAAGAAAGACCAGATGTTTGGATTGAGAGTCCTGAAA AATCAATAATTCTTTCCATCACCAGCGATATTCGAACTATAAGGTCTGAGGTTTTTGCTGCACCATATGGCTTAAGATTTCCTCGCATTGACAGGGTGCG ATATGACAAACCATGGCATGAGTGTCTTGATGTTCAATCTTTTATAGAACTTGTTCATTCGAGCAATGGCACCACCACAAAAGGTAAAGAACAAGATGGC AAACCAGCACCCGTGAAATCCTCCAAAAGAGGAGAGAGAAAGAAAGTTTCGGTTGTCCCTTCTCATTTGATTCAGACGGATGTCTCGAAGATCAAGGGGC AAACTTTGATATTTAAGGATACGATGTTTTATTTTGTTAATTTGCCTTCAACCCACACACTTGATTCCTTTCACAAAATGGTCGTGGAAAATGGAGGAAC ATTCTCAATGAATATGAACAATTCAGTTACCCACTGTATAGCAGCTGAAAGCAAAGGAATCAAGTATCAAGCTGCAAAGACTCATGGAGACATTATCCAT TATTCTTGGGTGTTGGACTGCTGTTCAGAGAAGAAGCTCATTCCTTTACAACCAAAGTACTTCCTCTTTCTTTCCGACTCTTCGAAGAAAAAATTACAGG AGGAAATCGACGAGTTCTCTGATTCTTACTTCTGGGATCTTGATCTTCATTCCATGAAACAGATGTTATCCAACATTGATGCATCAAAATATGCCAGTGC AGTCGACAGTTTCAAGAAAAAACACAGCGCAAATGAGAAGTGGAGTCGATTTTGTGGTTGTTGCATATACTTCTGTCATCCGCCTCAGCCTCTAACTCCT GATTGGGAATCTTTGATGGGGCTTGCACTGAGGAGGCTGAAGGTTGAACTTTTGATGGGCGGTGGAAATATCAGCGGTAGTCTTGTTCACTCTACCCATT TGGTTGTACTGACGCCACAGGGATCTAATCTGGACTTGGTTGCCCTAATGGAGAGCTTCACAGAAAGGGAGAGGCGGTACATACGCAACAAGAAATTTAA TGTTGTGGGATGGCAGTGGTTGGAGCAGTCGGTCGAGAAAGAGCAAAAGTTGGAAGAAGATGCATACAGCTTAAAGCCCTCTGGATTGGATGAGTGGAAC GTTGATGAAGAATTGGAACCCAACACTGACACAGGAGTGGAAGACGAGAGCCATGTTGTTTCTGCTGACGTAGTTGTCTCCACGGAAGATAGGGAGAGAG GTGAAACTAGTTTCGCTCGTCCACCGGCACAAGCCAAGAGGACGGCTAACAATAAGAAAAGAGGAAGGCCTACCGGTGTTAAGAACGCTGTTAGAAGAAC AAGGGCGCGTACTGTGAATAAGCCAGTCAAGATACACGAAACAAAATCAGATGGAAGCAGTTCAGCTGGTGATGAGGATGAAGTGAGTGCTATGGCAGCA GCAGGGGAAGGGATCAAAGGAAGAGCACAAGAAGAAGCCGGCAAGGAGAAGGCAGAAGTCAAGGAAGAGGAACTAGGAATTGACGAGATTGCGAGCAAAT CAGAATCAAGTAACCTGGAAAGGCATGGGGAGCGAGAGAAGATAGATTTAATGGATGATCCTGTGAATGCCATGTTGATGGATATGATCCCAAGCTTGGG AATGAAGGTGGTTGAAAACAAAGAGGACCGAAACCGAATCTACAAGTCCATTCAACAGCCACCGCCTTCCCCGGTGCAAACCGAAAGTGAGGAGAAGCCA ATTCTACCACCGCGGCCTCCCCCGGTGCAAACCCAAAGAAAAAAAGTGAGTTACAGGGAGTTAGCAGAGGAGCTACTCAAGGAATAG
AA sequence Show only first row Show all	>Lus10020013 pacid=23156140 polypeptide=Lus10020013 locus=Lus10020013.g ID=Lus10020013.BGIv1.0 annot-version=v1.0 MTEETKFSVMVSLFDWIQKSKYSAKKRTKFRKFLDTFCKPSDYFTAVRLILPGLDRERGSYGLKESVLATCLVDALGMSRDSPDALRLVNWRKGGAKTGV NAGNFALVASEVLQRRQSMVSGGLTIKELNDLLDRLASGENRSEKISILSTLIKKTNAQEMKWIIMIILKDLKLGLSEKTIFHEFHPDAEDLFNVTCDLK LVCEKLKDRHQRHKRQDIEVGKAVRPQLAMRISDAQAAWKKVCRCCLHGKEVIMECKFDGDRIQIHKNGTEIHFFSRNFLDHSEYEHGMSNIIQQCVLAD RCILDGEMLVWDNSLNRFAEFGSNQEIAKAAKNGLDGQKQVCLWIHLSRERHELLRKTVQPVKGRLEILVPSGGLNNHCSPGEPCCSLIAHNLDDVENFF KQIVENRDEGIVLKDLASKWEPGDRSGKWLKLKPDYIRAGSDLDVLIIGGYYGSGRRGGEVAQFLVGLAEQPSANTYPKRVGTGLSDDELNAVVTKLKPY FRKYDYPRKAPPSFYKVTNNSKERPDVWIESPEKSIILSITSDIRTIRSEVFAAPYGLRFPRIDRVRYDKPWHECLDVQSFIELVHSSNGTTTKGKEQDG KPAPVKSSKRGERKKVSVVPSHLIQTDVSKIKGQTLIFKDTMFYFVNLPSTHTLDSFHKMVVENGGTFSMNMNNSVTHCIAAESKGIKYQAAKTHGDIIH YSWVLDCCSEKKLIPLQPKYFLFLSDSSKKKLQEEIDEFSDSYFWDLDLHSMKQMLSNIDASKYASAVDSFKKKHSANEKWSRFCGCCIYFCHPPQPLTP DWESLMGLALRRLKVELLMGGGNISGSLVHSTHLVVLTPQGSNLDLVALMESFTERERRYIRNKKFNVVGWQWLEQSVEKEQKLEEDAYSLKPSGLDEWN VDEELEPNTDTGVEDESHVVSADVVVSTEDRERGETSFARPPAQAKRTANNKKRGRPTGVKNAVRRTRARTVNKPVKIHETKSDGSSSAGDEDEVSAMAA AGEGIKGRAQEEAGKEKAEVKEEELGIDEIASKSESSNLERHGEREKIDLMDDPVNAMLMDMIPSLGMKVVENKEDRNRIYKSIQQPPPSPVQTESEEKP ILPPRPPPVQTQRKKVSYRELAEELLKE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57160		ATLIG4	DNA ligase IV (.1)		Lus10020013 [exp]	0	1
AT1G30970	C2H2ZnF	SUF4	suppressor of FRIGIDA4, zinc f...		Lus10038373 [exp]	3.0	0.8030
AT2G47390			Prolyl oligopeptidase family p...		Lus10025027 [exp]	6.3	0.7785
AT1G30970	C2H2ZnF	SUF4	suppressor of FRIGIDA4, zinc f...		Lus10036234 [exp]	7.1	0.7939
AT4G00630		ATKEA2, KEA2	K+ efflux antiporter 2, K+ eff...		Lus10018844 [exp]	9.0	0.7821
AT4G26100		CKL1, CK1	casein kinase 1 (.1)		Lus10027628 [exp]	11.0	0.7801
AT1G01790		ATKEA1, KEA1	K+ efflux antiporter 1, K+ EFF...		Lus10017823 [exp]	13.0	0.7511
AT3G22590		PHP, CDC73	PLANT HOMOLOGOUS TO PARAFIBROM...		Lus10010571 [exp]	14.9	0.7601
AT5G02410		ALG10	homolog of yeast ALG10, DIE2/A...		Lus10003973 [exp]	19.4	0.7498
AT2G25570			binding (.1.2.3)		Lus10030074 [exp]	22.4	0.6869
AT1G79750		ATNADP-ME4	Arabidopsis thaliana NADP-mali...		Lus10037561 [exp]	33.1	0.6455

Compare expression of checked genes

Lus10020013 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.