Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19270 154 / 2e-43 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015539 [exp] 356 / 1e-122 AT2G19270 201 / 8e-62 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G075000 [exp] 177 / 6e-52 AT2G19270 148 / 7e-41 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10253 [flax] [poplar] PRCC Mitotic checkpoint regulator, MAD2B-interacting
Representative CDS sequence Show only first row Show all	>Lus10020014 pacid=23156220 polypeptide=Lus10020014 locus=Lus10020014.g ID=Lus10020014.BGIv1.0 annot-version=v1.0 ATGGATAGTTTGGTAGCCAGCTACGGATCTTCCGACGAAGACGAACCCCAACAGCAGCAACCACATCACCGCCATGAAAGATCATCCAGTTCCTCCACCT CTCTACCTCCCGCCCGATCTTCCACAAATCCTCTTTTCTCCGCCCTCCCTCGCCCTAAATCCACCCCCTCATCGTCATCTTCTTCGCCATCGCCGTCGTT CTTCTCTTCTTCCCTTCCTCCTCCAAAATCCCAAGCCTCCAACCCTAACCCTAAACGAATCATCCAAATCAAGCCTCCGCCTCTTCCAACCTATCCAGAC GACGATGACGAAGAACCCGTACATCCCCGTAAATCTGAAAGATCAACCGCTGTCCACTCTACATCGGTGAAATCCTTCCTGTCAAGTATTCCGGCCCCGA AGAGTTCATCCGCCTTGGGAGCTCTCCCTTCCTCCAGTTCTGGCCGCAGATCCATCATCGATACTAGTTCTTCCGCCCCCGTCGATCATGCTAGTCATCC GGATCCTTCGGCTGTTACTGTTCCTCCACAGAATGTAGAAACCGAAGCAGCAGCAGCTACTTTCGACTCCGGGTACGCTGATTATTCCAATTATCAGGGT TACGATAGTAGGAGCAGCTGCGGAGCAGTGGTGGATCAGACGGTTGACGAGGGAGGCTATGCCGCAGCAACAGCATCAGCAGCATACGGGAACAATTGGG GCGACGAAGCAGCCGTAGGTGCAGGTAGGTCCTCTCGTGGGAAGAGGGGAAGGTACGAGATACCGACTGGGATTGAGATTATTGAAGTGAAGCAGGATGA GCTGACCAAGAACAGGCCTAGAGAGGACCAAGTTAAGGCCACCGGAATCGCTTTCGGCCCTGCATATCAGCCAATTTCTTCGAGCAAAGGGAAGCCTAAC AAACTTCACAAGAGGAAGCATCAGATTGGGACCTTGTACTTCGACATGAAGCAGAAGGAGATGGAATTGCAAGAACGCCGTGCCAAAGGATTCCTCACCA AAGCTCAAACACACGCCAAATATGGGTGGTGA
AA sequence Show only first row Show all	>Lus10020014 pacid=23156220 polypeptide=Lus10020014 locus=Lus10020014.g ID=Lus10020014.BGIv1.0 annot-version=v1.0 MDSLVASYGSSDEDEPQQQQPHHRHERSSSSSTSLPPARSSTNPLFSALPRPKSTPSSSSSSPSPSFFSSSLPPPKSQASNPNPKRIIQIKPPPLPTYPD DDDEEPVHPRKSERSTAVHSTSVKSFLSSIPAPKSSSALGALPSSSSGRRSIIDTSSSAPVDHASHPDPSAVTVPPQNVETEAAAATFDSGYADYSNYQG YDSRSSCGAVVDQTVDEGGYAAATASAAYGNNWGDEAAVGAGRSSRGKRGRYEIPTGIEIIEVKQDELTKNRPREDQVKATGIAFGPAYQPISSSKGKPN KLHKRKHQIGTLYFDMKQKEMELQERRAKGFLTKAQTHAKYGW

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G19270			unknown protein		Lus10020014 [exp]	0	1
AT1G06210			ENTH/VHS/GAT family protein (....		Lus10024896 [exp]	6.1	0.7805
AT2G34585			unknown protein		Lus10023307 [exp]	7.9	0.7379
AT5G54680	bHLH	bHLH105, ILR3	iaa-leucine resistant3, basic ...		Lus10011167 [exp]	8.2	0.7352
AT1G51700	DOF	ADOF1, AtDof1. ...	DOF zinc finger protein 1 (.1)		Lus10027797 [exp]	11.6	0.7702
AT5G20900	ZIM	TIFY3B, JAZ12	jasmonate-zim-domain protein 1...		Lus10011929 [exp]	11.8	0.7017
AT5G54680	bHLH	bHLH105, ILR3	iaa-leucine resistant3, basic ...		Lus10043076 [exp]	12.0	0.7334
AT3G58110			unknown protein		Lus10002186 [exp]	12.1	0.7311
AT5G44170			S-adenosyl-L-methionine-depend...		Lus10018640 [exp]	13.0	0.7326
AT1G34370	C2H2ZnF	STOP1	sensitive to proton rhizotoxic...		Lus10006071 [exp]	19.1	0.7240
AT5G53280		PDV1	plastid division1 (.1)		Lus10027574 [exp]	22.5	0.6575

Compare expression of checked genes

Lus10020014 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.