Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57330 513 / 0 Galactose mutarotase-like superfamily protein (.1) AT3G61610 401 / 4e-141 Galactose mutarotase-like superfamily protein (.1) AT5G14500 399 / 2e-140 aldose 1-epimerase family protein (.1) AT3G01590 395 / 7e-139 Galactose mutarotase-like superfamily protein (.1.2) AT4G23730 384 / 2e-134 Galactose mutarotase-like superfamily protein (.1) AT4G25900 360 / 5e-125 Galactose mutarotase-like superfamily protein (.1) AT5G66530 150 / 8e-43 Galactose mutarotase-like superfamily protein (.1.2) AT1G55370 43 / 0.0002 NDF5 NDH-dependent cyclic electron flow 5 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015540 [exp] 598 / 0 AT5G57330 522 / 0.0 Galactose mutarotase-like superfamily protein (.1) Lus10026106 [exp] 492 / 6e-177 AT5G57330 484 / 1e-173 Galactose mutarotase-like superfamily protein (.1) Lus10041629 [exp] 486 / 1e-174 AT5G57330 479 / 4e-172 Galactose mutarotase-like superfamily protein (.1) Lus10000414 [exp] 482 / 3e-172 AT5G57330 475 / 9e-170 Galactose mutarotase-like superfamily protein (.1) Lus10012640 [exp] 417 / 3e-147 AT3G61610 511 / 0.0 Galactose mutarotase-like superfamily protein (.1) Lus10010131 [exp] 414 / 5e-146 AT3G61610 518 / 0.0 Galactose mutarotase-like superfamily protein (.1) Lus10028739 [exp] 400 / 7e-141 AT4G23730 474 / 1e-170 Galactose mutarotase-like superfamily protein (.1) Lus10017549 [exp] 400 / 1e-140 AT4G23730 475 / 1e-170 Galactose mutarotase-like superfamily protein (.1) Lus10032084 [exp] 399 / 5e-139 AT5G14500 494 / 2e-176 aldose 1-epimerase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G089800 [exp] 541 / 0 AT5G57330 513 / 0.0 Galactose mutarotase-like superfamily protein (.1) Potri.006G165400 [exp] 540 / 0 AT5G57330 525 / 0.0 Galactose mutarotase-like superfamily protein (.1) Potri.001G037700 [exp] 520 / 0 AT5G57330 483 / 2e-173 Galactose mutarotase-like superfamily protein (.1) Potri.003G187300 [exp] 517 / 0 AT5G57330 475 / 3e-170 Galactose mutarotase-like superfamily protein (.1) Potri.002G167200 [exp] 414 / 3e-146 AT3G61610 513 / 0.0 Galactose mutarotase-like superfamily protein (.1) Potri.001G344100 [exp] 404 / 3e-142 AT5G14500 501 / 0.0 aldose 1-epimerase family protein (.1) Potri.001G095300 [exp] 399 / 2e-140 AT3G61610 461 / 3e-165 Galactose mutarotase-like superfamily protein (.1) Potri.007G023200 [exp] 153 / 4e-44 AT5G66530 483 / 1e-173 Galactose mutarotase-like superfamily protein (.1.2) Potri.019G034000 [exp] 44 / 9e-05 AT1G55370 267 / 9e-87 NDH-dependent cyclic electron flow 5 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0103 [flax] [poplar] Gal_mutarotase PF01263 [flax] [poplar] Aldose_epim Aldose 1-epimerase
Representative CDS sequence Show only first row Show all	>Lus10020015 pacid=23156130 polypeptide=Lus10020015 locus=Lus10020015.g ID=Lus10020015.BGIv1.0 annot-version=v1.0 ATGGCTTCTGCTGCTGCTGCTGCAGGTGGCGAAAGGTTACCAGTAGAGGTGTGTAAAGGCATCAACGGCCTCGACAAGGTCGTGCTCCGTGAAGCTCGCG GCAGTTCTGCCGAGGTGTATTTGTATGGGGGTCATGTAACCTCTTGGAAAAATGACCATGGGGAGGAGTTGCTCTTCTTAAGCAGTAAGGCTATATTCAA ACCTCCAAAGGCGATTCGTGGAGGCATTCCAATATGCTTCCCTCAATTTTCCAGTCATGGTAGCCTTGAGGCGCATGGTTTTGCTAGGAATAGGTTTTGG AGTGTTGAGTCTGATCCACCTCCTTTTCCAACCAGTTCTACTAGTAAGGCTTATGTTGATTTGATACTTAAGCCAACTGAAGAGGATCTAAAGATCTGGC CTCACAGCTTTGAGTTCCGCTTGAGAGTAGCCTTGGGCCCTGCTGGAGATCTACTGTTGACATCTCGTGTCAGGAATACCAGCACAGATGGAAAGCCCTT CTCATTCACTTTCGCATATCATACTTACTTTGCTGTATCAGACATAAGTGAAGTTCGGGTTGAAGGTCTGGAGACACTTGACTACCTTGACAACCTACAA AATAAGGAGCGTTTTACTGAACAAGGAGATGCTATAACATTCGAATCAGAAATCGACAAGATTTATGTTGGCACCCCTACAAAGATCGCAATTCTGGATC ACGAAAAGAAGAGGACATTCGTACTGCGCAAAGATGGGCTCCCCGATGCTGTTGTGTGGAATCCATGGGACAAAAGGGCGAAGAGTATAGCGGATCTTGG GGATGATGACTACAAACACATGCTGTGTGTGGAAGCTGCTGCTGTCGAGAAGCCCATCACGATCAAGTCCGGTGAGGAGTGGAGAGGAAGACTTGAACTT TCTGCAGTTCCATCAAGCTACTGTAGTGGACAACTTGATCCTAAGAAAGTTCTCCTCACCAGCTGA
AA sequence Show only first row Show all	>Lus10020015 pacid=23156130 polypeptide=Lus10020015 locus=Lus10020015.g ID=Lus10020015.BGIv1.0 annot-version=v1.0 MASAAAAAGGERLPVEVCKGINGLDKVVLREARGSSAEVYLYGGHVTSWKNDHGEELLFLSSKAIFKPPKAIRGGIPICFPQFSSHGSLEAHGFARNRFW SVESDPPPFPTSSTSKAYVDLILKPTEEDLKIWPHSFEFRLRVALGPAGDLLLTSRVRNTSTDGKPFSFTFAYHTYFAVSDISEVRVEGLETLDYLDNLQ NKERFTEQGDAITFESEIDKIYVGTPTKIAILDHEKKRTFVLRKDGLPDAVVWNPWDKRAKSIADLGDDDYKHMLCVEAAAVEKPITIKSGEEWRGRLEL SAVPSSYCSGQLDPKKVLLTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57330			Galactose mutarotase-like supe...		Lus10020015 [exp]	0	1
AT5G57330			Galactose mutarotase-like supe...		Lus10015540 [exp]	3.9	0.8999
AT1G19360		RRA3	reduced residual arabinose 3, ...		Lus10042340 [exp]	5.3	0.9037
AT4G23740			Leucine-rich repeat protein ki...		Lus10039321 [exp]	7.5	0.8992
AT3G09740		ATSYP71, SYP71	syntaxin of plants 71 (.1)		Lus10015075 [exp]	13.7	0.8800
AT5G49510		PFD3, PDF3	prefoldin 3 (.1.2)		Lus10017066 [exp]	14.1	0.9000
					Lus10026715 [exp]	14.3	0.8934
AT5G13690		NAGLU, CYL1	N-ACETYL-GLUCOSAMINIDASE, CYCL...		Lus10029494 [exp]	17.1	0.8464
AT4G09720		AtRABG3a	RAB GTPase homolog G3A (.1.2.3...		Lus10028719 [exp]	17.5	0.8832
AT3G02780		IDI2, IPIAT1, I...	ATISOPENTENYL DIPHOSPHE ISOMER...		Lus10020210 [exp]	18.7	0.8884
AT5G61970			signal recognition particle-re...		Lus10032538 [exp]	23.6	0.8855

Compare expression of checked genes

Lus10020015 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.