Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G62400 615 / 0 HT1 high leaf temperature 1, Protein kinase superfamily protein (.1) AT5G58950 307 / 2e-100 Protein kinase superfamily protein (.1) AT4G31170 296 / 1e-97 Protein kinase superfamily protein (.1.2.3.4) AT2G24360 277 / 5e-90 Protein kinase superfamily protein (.1) AT3G46930 249 / 2e-78 Protein kinase superfamily protein (.1) AT4G38470 249 / 2e-77 STY46 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) AT5G01850 239 / 2e-76 Protein kinase superfamily protein (.1) AT4G35780 242 / 1e-74 STY17 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) AT2G17700 238 / 3e-73 STY8 serine/threonine/tyrosine kinase 8, ACT-like protein tyrosine kinase family protein (.1) AT5G50180 229 / 2e-72 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015541 [exp] 756 / 0 AT1G62400 623 / 0.0 high leaf temperature 1, Protein kinase superfamily protein (.1) Lus10042122 [exp] 394 / 2e-136 AT1G62400 404 / 7e-141 high leaf temperature 1, Protein kinase superfamily protein (.1) Lus10011173 [exp] 323 / 2e-107 AT5G58950 567 / 0.0 Protein kinase superfamily protein (.1) Lus10015436 [exp] 323 / 3e-107 AT5G58950 572 / 0.0 Protein kinase superfamily protein (.1) Lus10025442 [exp] 318 / 2e-105 AT5G58950 510 / 2e-178 Protein kinase superfamily protein (.1) Lus10000237 [exp] 299 / 7e-101 AT1G62400 313 / 3e-107 high leaf temperature 1, Protein kinase superfamily protein (.1) Lus10002374 [exp] 298 / 1e-100 AT1G62400 312 / 7e-107 high leaf temperature 1, Protein kinase superfamily protein (.1) Lus10020374 [exp] 294 / 2e-96 AT4G31170 697 / 0.0 Protein kinase superfamily protein (.1.2.3.4) Lus10022653 [exp] 254 / 3e-80 AT4G38470 673 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G022800 [exp] 677 / 0 AT1G62400 613 / 0.0 high leaf temperature 1, Protein kinase superfamily protein (.1) Potri.004G001900 [exp] 656 / 0 AT1G62400 620 / 0.0 high leaf temperature 1, Protein kinase superfamily protein (.1) Potri.012G080000 [exp] 394 / 1e-136 AT1G62400 405 / 9e-142 high leaf temperature 1, Protein kinase superfamily protein (.1) Potri.015G075200 [exp] 394 / 1e-136 AT1G62400 404 / 2e-141 high leaf temperature 1, Protein kinase superfamily protein (.1) Potri.005G082200 [exp] 340 / 3e-113 AT5G58950 607 / 0.0 Protein kinase superfamily protein (.1) Potri.007G085300 [exp] 333 / 1e-110 AT5G58950 604 / 0.0 Protein kinase superfamily protein (.1) Potri.006G280000 [exp] 303 / 4e-100 AT4G31170 677 / 0.0 Protein kinase superfamily protein (.1.2.3.4) Potri.018G001800 [exp] 303 / 4e-100 AT2G24360 663 / 0.0 Protein kinase superfamily protein (.1) Potri.018G001900 [exp] 299 / 2e-98 AT2G24360 648 / 0.0 Protein kinase superfamily protein (.1) Potri.006G279900 [exp] 296 / 2e-97 AT2G24360 642 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10020018 pacid=23156184 polypeptide=Lus10020018 locus=Lus10020018.g ID=Lus10020018.BGIv1.0 annot-version=v1.0 ATGGCTGGTTCTGCTTGTTTCCCTGCTTTTCGCCTGGGAAAACCCAAGGGCAAAAGATTGGCAATGCCTTCCACATCAAGAAGAGATCATAATCATATGA ATTCAGACACGGAAAACATGGAGAGGAAGAGGTTTGACAGTTTGGAATCGTGGTCGATGATATTGGAGTCGGAGAACGTGGAGACATGGGAGGCTTCTAA GGAAGACCAAGAAGAGTGGACAGCCGACCTTTCCCAGTTGTTCATAGGAAACAAGTTTGCATCTGGGGCTCACAGTAGGATATACCGCGGAATCTACAAG CAAAGAGCAGTTGCTGTTAAAATGGTGAGGATCCCTAACCAGAAGGAGGAGACTAGATCTCTCCTTGAGCAGCAGTTCAAATGTGAAGTTGCTTTGCTCT CCAGGCTCTACCATCCCAATATTGTTCAGTTCATAGCTGCTTGCAAAAAGCCACCAGTCTACTGCATTATCACAGAGTACATGTCACAAGGAACTCTGAG GATGTACCTAAACAAGAAAGAGCCCTACTCGCTCTCAACCGAGACCGTTCTGAGGCTGGCTCTTGATATATCACGAGGGATGGAGTATCTTCACTCCCAA GGGGTAATCCACAGAGACCTGAAGTCGAACAATCTACTTCTTAATGATGAAATGCGGGTCAAAGTGGCAGATTTTGGTACATCCTGTCTCGAGACACAGT GCCAGGAGACGAAAGGAAATAAGGGGACTTACCGTTGGATGGCACCGGAGATGATCAAGGAGAAGCCTTACACTCGCAAAGTCGACGTTTATAGTTTTGG TATTGTGTTGTGGGAGCTCACAACAGCTTTGCTTCCGTTCCAAGGAATGACTCCTGTCCAGGCCGCTTTTGCAGTGGCTGAGAAGAAGGAACGGCCTCCT CTGCCTGCGAGTTGTCAGCCTGCACTTGCCCACTTGATCAAGTGTTGTTGGGCTGCAAATCCCTCGAAACGGCCAGATTTCAGTGACATTGTTTGTGCTT TGGAGAAGTACGATGAATGCGTGAAAGAAGGGCTTCCTATGACTTCACATGCCACACTAGTTAGCCGAAGTCTCATTCTGGAACGATTCAAGGCTTGTGT ATCTGTAAGATCATCGTCATCATCCATACCTGTACATGCCTAG
AA sequence Show only first row Show all	>Lus10020018 pacid=23156184 polypeptide=Lus10020018 locus=Lus10020018.g ID=Lus10020018.BGIv1.0 annot-version=v1.0 MAGSACFPAFRLGKPKGKRLAMPSTSRRDHNHMNSDTENMERKRFDSLESWSMILESENVETWEASKEDQEEWTADLSQLFIGNKFASGAHSRIYRGIYK QRAVAVKMVRIPNQKEETRSLLEQQFKCEVALLSRLYHPNIVQFIAACKKPPVYCIITEYMSQGTLRMYLNKKEPYSLSTETVLRLALDISRGMEYLHSQ GVIHRDLKSNNLLLNDEMRVKVADFGTSCLETQCQETKGNKGTYRWMAPEMIKEKPYTRKVDVYSFGIVLWELTTALLPFQGMTPVQAAFAVAEKKERPP LPASCQPALAHLIKCCWAANPSKRPDFSDIVCALEKYDECVKEGLPMTSHATLVSRSLILERFKACVSVRSSSSSIPVHA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G62400		HT1	high leaf temperature 1, Prote...		Lus10020018 [exp]	0	1
AT2G01290		RPI2	ribose-5-phosphate isomerase 2...		Lus10036094 [exp]	1.7	0.8892
					Lus10032581 [exp]	2.4	0.8691
AT5G19060			unknown protein		Lus10026459 [exp]	2.8	0.8647
AT5G10530			Concanavalin A-like lectin pro...		Lus10007075 [exp]	2.8	0.8699
					Lus10025227 [exp]	3.0	0.8547
AT3G07130		ATPAP15, PAP15	purple acid phosphatase 15 (.1...		Lus10016667 [exp]	8.1	0.8344
AT1G71100		RSW10	RADIAL SWELLING 10, Ribose 5-p...		Lus10026777 [exp]	8.4	0.8592
AT2G20020		CAF1, ATCAF1	RNA-binding CRS1 / YhbY (CRM) ...		Lus10011119 [exp]	8.9	0.8377
AT3G57080		RPB5B, NRPE5	RNA POLYMERASE II FIFTH LARGES...		Lus10018022 [exp]	12.2	0.7786
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Lus10032971 [exp]	12.6	0.8240

Compare expression of checked genes

Lus10020018 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.