Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22140 374 / 2e-133 EBS EARLY BOLTING IN SHORT DAYS, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) AT4G39100 282 / 9e-97 SHL1 short life, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) AT4G04260 266 / 4e-91 Bromo-adjacent homology (BAH) domain-containing protein (.1) AT4G14700 57 / 2e-09 ORC1, ATORC1A, ORC1A origin recognition complex 1 (.1) AT4G12620 54 / 2e-08 ORC1B, ATORC1B, UNE13 UNFERTILIZED EMBRYO SAC 13, origin of replication complex 1B (.1) AT4G23120 53 / 3e-08 Bromo-adjacent homology (BAH) domain-containing protein (.1) AT4G11560 53 / 6e-08 bromo-adjacent homology (BAH) domain-containing protein (.1) AT3G43990 49 / 7e-07 Bromo-adjacent homology (BAH) domain-containing protein (.1) AT2G25120 45 / 2e-05 Bromo-adjacent homology (BAH) domain-containing protein (.1) AT3G48050 45 / 2e-05 SUO 'shuttle' in chinese, BAH domain ;TFIIS helical bundle-like domain (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015543 [exp] 429 / 5e-155 AT4G22140 378 / 8e-135 EARLY BOLTING IN SHORT DAYS, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Lus10017482 [exp] 284 / 1e-97 AT4G39100 326 / 2e-114 short life, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Lus10028801 [exp] 284 / 1e-97 AT4G39100 324 / 1e-113 short life, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Lus10041960 [exp] 264 / 5e-90 AT4G39100 291 / 7e-101 short life, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Lus10017968 [exp] 207 / 1e-64 AT1G28560 334 / 1e-111 SHOOT REDIFFERENTIATION DEFECTIVE 2, snRNA activating complex family protein (.1.2) Lus10008527 [exp] 56 / 9e-09 AT4G11560 596 / 0.0 bromo-adjacent homology (BAH) domain-containing protein (.1) Lus10008492 [exp] 55 / 1e-08 AT4G11560 609 / 0.0 bromo-adjacent homology (BAH) domain-containing protein (.1) Lus10033410 [exp] 55 / 2e-08 AT3G48060 726 / 0.0 BAH domain ;TFIIS helical bundle-like domain (.1) Lus10042137 [exp] 53 / 6e-08 AT3G48050 764 / 0.0 'shuttle' in chinese, BAH domain ;TFIIS helical bundle-like domain (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G010901 [exp] 385 / 2e-137 AT4G22140 401 / 1e-143 EARLY BOLTING IN SHORT DAYS, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Potri.006G270601 [exp] 383 / 6e-137 AT4G22140 409 / 2e-147 EARLY BOLTING IN SHORT DAYS, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Potri.004G004900 [exp] 383 / 9e-137 AT4G22140 409 / 2e-147 EARLY BOLTING IN SHORT DAYS, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Potri.014G157100 [exp] 347 / 1e-122 AT4G22140 385 / 7e-138 EARLY BOLTING IN SHORT DAYS, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Potri.002G226000 [exp] 344 / 1e-121 AT4G22140 379 / 2e-135 EARLY BOLTING IN SHORT DAYS, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Potri.004G159900 [exp] 299 / 8e-104 AT4G39100 323 / 2e-113 short life, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Potri.009G121000 [exp] 293 / 1e-101 AT4G39100 318 / 2e-111 short life, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Potri.003G127400 [exp] 60 / 2e-10 AT4G11560 609 / 0.0 bromo-adjacent homology (BAH) domain-containing protein (.1) Potri.001G104300 [exp] 59 / 5e-10 AT4G11560 607 / 0.0 bromo-adjacent homology (BAH) domain-containing protein (.1) Potri.009G054300 [exp] 48 / 2e-06 AT4G14700 1015 / 0.0 origin recognition complex 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [flax] [poplar] zf-FYVE-PHD PF00628 [flax] [poplar] PHD PHD-finger CL0390 [flax] [poplar] PF01426 [flax] [poplar] BAH BAH domain
Representative CDS sequence Show only first row Show all	>Lus10020020 pacid=23156230 polypeptide=Lus10020020 locus=Lus10020020.g ID=Lus10020020.BGIv1.0 annot-version=v1.0 ATGGCTAAAACAAGGCCAGGCCTCGCCTCCAGTAACACCAAGCCCAAAGCTGGGAAGAGGGTGCTAGACTCTTATACCATTCGTGGCACCACCAAAGTCG TCAGAGTGGGCGACTGTGTGCTGTTGAGACCTTCCGATACCGGCAAGCCCCCCTATGTGGCTAGAATTGAGGCCATCGAGTCTGACATCAGAAACAATGT GAAGGTGAGGGTGAGATGGTACTACCGCCCTGAGGAGTCCCTTGGCGGGCGTCGTCAATTCCATGGTGCTAAGGAGCTATTTCTCTCTGACCATTTCGAT GTCCAGAGTGCTCATACCATTGAGGGGAAGTGCGTTGTTCACTCTTTTAAGAATTATACCAAGCTTGAGAATGTTGGTACTGAGGATTACTTCTGTAGAT TTGAGTATAAGGCTGCTACTGGGGGTTTCACCCCTGACCGTGTTGCTGTGTATTGCACATGTGAGATGCCGTATAACCCGGATGACCTTATGGTCCAATG CGAGGACTGCAAGGATTGGTACCATCCAGCATGTGTGGGAATGACAATTGAAGAAGCAAAGAAACTGGACCACTTTGCATGCTCTGAATGTGCTCCTGCT CCTGATCAAAATGGACTCAAAAGACCACAAAATGGGTTTTCAGCATCACCTGATGGCAAGGCTTGGTTTTGGCAAGTGGAAAGTCCGATGGAATCTTGA
AA sequence Show only first row Show all	>Lus10020020 pacid=23156230 polypeptide=Lus10020020 locus=Lus10020020.g ID=Lus10020020.BGIv1.0 annot-version=v1.0 MAKTRPGLASSNTKPKAGKRVLDSYTIRGTTKVVRVGDCVLLRPSDTGKPPYVARIEAIESDIRNNVKVRVRWYYRPEESLGGRRQFHGAKELFLSDHFD VQSAHTIEGKCVVHSFKNYTKLENVGTEDYFCRFEYKAATGGFTPDRVAVYCTCEMPYNPDDLMVQCEDCKDWYHPACVGMTIEEAKKLDHFACSECAPA PDQNGLKRPQNGFSASPDGKAWFWQVESPMES

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G22140		EBS	EARLY BOLTING IN SHORT DAYS, P...		Lus10020020 [exp]	0	1
AT1G75330		OTC	ornithine carbamoyltransferase...		Lus10033203 [exp]	6.6	0.9043
AT4G22140		EBS	EARLY BOLTING IN SHORT DAYS, P...		Lus10015543 [exp]	7.9	0.8771
AT1G50660			unknown protein		Lus10021521 [exp]	11.8	0.8964
AT5G67260		CYCD3;2	CYCLIN D3;2 (.1)		Lus10011507 [exp]	12.0	0.8646
AT5G65260			RNA-binding (RRM/RBD/RNP motif...		Lus10009323 [exp]	12.6	0.8824
AT1G75330		OTC	ornithine carbamoyltransferase...		Lus10010641 [exp]	17.7	0.9028
AT1G80620			S15/NS1, RNA-binding protein (...		Lus10038010 [exp]	19.8	0.8917
AT4G26500		SUFE1, EMB1374,...	SULFUR E 1, MBRYO DEFECTIVE 13...		Lus10026101 [exp]	22.4	0.8863
AT2G31610			Ribosomal protein S3 family pr...		Lus10012857 [exp]	24.2	0.9013
AT2G34480			Ribosomal protein L18ae/LX fam...		Lus10040332 [exp]	25.4	0.8962

Compare expression of checked genes

Lus10020020 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.