Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11800 464 / 2e-161 endonuclease/exonuclease/phosphatase family protein (.1) AT1G55915 45 / 9e-05 zinc ion binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015544 [exp] 759 / 0 AT1G11800 417 / 1e-143 endonuclease/exonuclease/phosphatase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G010400 [exp] 493 / 8e-172 AT1G11800 456 / 2e-157 endonuclease/exonuclease/phosphatase family protein (.1) Potri.004G010900 [exp] 362 / 5e-122 AT1G11800 345 / 7e-116 endonuclease/exonuclease/phosphatase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0530 [flax] [poplar] DNase_I-like PF03372 [flax] [poplar] Exo_endo_phos Endonuclease/Exonuclease/phosphatase family
Representative CDS sequence Show only first row Show all	>Lus10020021 pacid=23156134 polypeptide=Lus10020021 locus=Lus10020021.g ID=Lus10020021.BGIv1.0 annot-version=v1.0 ATGGCGCTCAGACTGTTGGCTTTCGGAAGTAAAGCTATTGATATCTCCGTGAAGATCCCACGACCGTCGAAGACAGTACAAACCTCCTCGATTCCGGCTC AGCTCTTCTTCCCCAAACCCACCAAAGCCATCGTCGGAACAATGTCGTGGTCCTGCAAGAAATGCACATTCATCAACCCTTCCTCTTCTTCTAATTCAGC CTGCGAACTCTGCCTCTCACCCGTTTCTCCTACCGCCATTTCGTCTCCTCCCAAACCGTCGGAATCCCCGCGGTGGTCTTGCAAGGCCTGTACTTTCCTC AATTCCTTCAAGAATTCCGACTGTGTGATCTGTGGAACCAGGTCCCCTCCTTCCTTCTTGGACGATACTTCCATCGACGCCCACTTGGATCCTTCCGTTG GCTCCGTCTTCCTACCTTTGTTAAGGCCTTGCAAGAGGAAGCTGCCTGAGGGATCACCGGAGCCGGCCGACGATCCTTCTTCTAAAATTCCGCTTCTTTC CAAGGAATGTGGTGATGGGGATAGATTGGAATTGGGAAGAGTTAGGGCTTTAAACAAGGCTGCTTCAGTTACTGTTGTAAAGGGTGATGTTGATTTACCT AGAACTGGGATTTCACTGAAAATCTTGAGCTACAATGTTTGGTTCCGAGAGGACTTGGAATTGCAGAACAGGATGAGAGCTATTGGGAACCTTATTCAGT TACATTCTCCTGATATTATCTGTCTTCAGGAGGTTACTCCAGACATCTATGACATATTTCAGCGGTCCACTTGGTGGAAAACGTACCGTTGCTCTCTCTC AAGTGAGGCAGCGAGTTCAAGATCATACTTCTGCATGCAGTTAAGCAAGGTTCCGGTCAAATCCTTCAGCATTAGGCCTTTCAGGAACTCCGTAATGGGC AGAGAACTATGCATTGCTGAGCTGAAACTAGAGGGGAACATGCCGCTAGTTGTTGCTACTAGCCACCTGGAGAGCCCCTGCCCGGGACCTCCGAAATGGG ATCAGATGTTCAGCACAGAACGCGTAGTTCAGGCAAACGAGGCCGTCGACTTGCTCAAGGAGAATCAAAATGTGATCTTTTGTGGTGATATGAATTGGAG CGACAAATTAGATGGGGAGTTCCCTTTACCTAGTGGATGGACTGATGTATGGGCAGAGTTGAAGGCAGGGGACAATGGATACACATACGATACGAAATCC AACCAAATGCTGACAGGAAACCGAACGCTGCAGAAAAGACTCGATCGGTTCGTATGCAATCTTCGAGATTTCAAAGCGAGCAGTATCGAAATGATTGGAA AGGAGGCGATACCGGGGTTGTCATATACTAAGGAGAAGAGAGTTAAGCAGGAGATTAAAAGGCTGGAGCTTCCTGTTTTGCCTAGCGACCATTATGGTTT GCTGTTAACACTTTCTTCTGTCAGGTAG
AA sequence Show only first row Show all	>Lus10020021 pacid=23156134 polypeptide=Lus10020021 locus=Lus10020021.g ID=Lus10020021.BGIv1.0 annot-version=v1.0 MALRLLAFGSKAIDISVKIPRPSKTVQTSSIPAQLFFPKPTKAIVGTMSWSCKKCTFINPSSSSNSACELCLSPVSPTAISSPPKPSESPRWSCKACTFL NSFKNSDCVICGTRSPPSFLDDTSIDAHLDPSVGSVFLPLLRPCKRKLPEGSPEPADDPSSKIPLLSKECGDGDRLELGRVRALNKAASVTVVKGDVDLP RTGISLKILSYNVWFREDLELQNRMRAIGNLIQLHSPDIICLQEVTPDIYDIFQRSTWWKTYRCSLSSEAASSRSYFCMQLSKVPVKSFSIRPFRNSVMG RELCIAELKLEGNMPLVVATSHLESPCPGPPKWDQMFSTERVVQANEAVDLLKENQNVIFCGDMNWSDKLDGEFPLPSGWTDVWAELKAGDNGYTYDTKS NQMLTGNRTLQKRLDRFVCNLRDFKASSIEMIGKEAIPGLSYTKEKRVKQEIKRLELPVLPSDHYGLLLTLSSVR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11800			endonuclease/exonuclease/phosp...		Lus10020021 [exp]	0	1
AT5G25090		AtENODL13	early nodulin-like protein 13 ...		Lus10026880 [exp]	3.7	0.9457
AT3G01015			TPX2 (targeting protein for Xk...		Lus10030836 [exp]	6.2	0.9367
AT1G16630			unknown protein		Lus10006845 [exp]	7.9	0.9394
AT1G65710			unknown protein		Lus10010952 [exp]	14.0	0.9320
AT1G67820			Protein phosphatase 2C family ...		Lus10006222 [exp]	14.7	0.9290
AT4G33670			NAD(P)-linked oxidoreductase s...		Lus10020504 [exp]	15.4	0.8818
AT5G43020			Leucine-rich repeat protein ki...		Lus10024803 [exp]	15.5	0.9197
AT4G14330			P-loop containing nucleoside t...		Lus10021167 [exp]	17.1	0.9287
AT5G42330			unknown protein		Lus10013229 [exp]	18.1	0.9241
AT1G67590			Remorin family protein (.1.2)		Lus10036997 [exp]	20.3	0.8858

Compare expression of checked genes

Lus10020021 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.