Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04450 53 / 1e-07 WRKY ATWRKY42, WRKY42 WRKY family transcription factor (.1) AT4G22070 51 / 6e-07 WRKY ATWRKY31, WRKY31 WRKY DNA-binding protein 31 (.1) AT1G62300 47 / 1e-05 WRKY ATWRKY6, WRKY6 WRKY family transcription factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015546 [exp] 141 / 3e-39 AT4G04450 264 / 5e-84 WRKY family transcription factor (.1) Lus10035286 [exp] 45 / 4e-05 AT1G62300 324 / 2e-104 WRKY family transcription factor (.1) Lus10009969 [exp] 42 / 0.0002 AT4G04450 166 / 8e-49 WRKY family transcription factor (.1) Lus10030040 [exp] 43 / 0.0003 AT1G62300 224 / 2e-96 WRKY family transcription factor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G007800 [exp] 59 / 2e-09 AT1G62300 391 / 1e-129 WRKY family transcription factor (.1) Potri.014G155100 [exp] 58 / 4e-09 AT1G62300 310 / 6e-98 WRKY family transcription factor (.1) Potri.004G007500 [exp] 56 / 2e-08 AT4G04450 419 / 8e-141 WRKY family transcription factor (.1) Potri.002G228400 [exp] 54 / 7e-08 AT1G62300 337 / 2e-108 WRKY family transcription factor (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020023 pacid=23156153 polypeptide=Lus10020023 locus=Lus10020023.g ID=Lus10020023.BGIv1.0 annot-version=v1.0 ATGCATATGCTTTCTCAGCCACAACAGCAGCAGCAGCAGAACCCCGCGCCACCTCCGACAAATCACCCACACCAACCGGTGGCCAGACAGTTTTCGGAAA GGGGGCCGCCATCATCAACTGAAACGGAATCATCCTCCGACGAGCGGACCAGATCAGAATCTTCCCCTCGAAACGAGATGGGCACTCGAACTACTAGTGG GAATAAAGCAGTTGTTGTTGATCATGAGTACTGCAGTCGTTTGGAGTCCGATCAACACAATTCTCAACTGGGATGGATCAACGCTAATACATCCAACGTC GGCGCTGCCGGTTCTGAAATACCCAAAAGCATGGAGCAACAACCCAACACTACTACTACCACCATGAGAAAAGCCCGTGTCTCTGTCCGAGCCCGCTCCG AGGCCCCAATGGCAACCATAACCACCCACTCCCACCCGCCGCCATCGCAATGGCTTCCACCACAAAAGCCCCCACCCGCCCCCGCCACTATGTTACTCTC CGGCTCAACATCCACCACCGACGTCCACGCTCCTACAACTACTAGTACTACTACTCATGACCTATTAACTGCCAACTTGCTATCCAGAGCGATTCTTCCG CAGCCAAACAACAACCACGTGGCAACCATCTCGGCTTCGGCTCCTTTCCCGACCGTCACATTGGACCTAACTACCCGAGGACAGCCGGTCTATTATAATC AGTCAAAGTTCTCCGGCCTCCAGCTGTCACACCAACAGTACCCGGCCGACAGATCAGTCATGCCGATGATGATGCTACCGCCGCCGCCAGTTCAGGCTTC GTTAACGGAGTCGGTCAGTGCGGCCACCGCTGCCCCCCTGCCCTCCTTTCATCGAGACTATACCCCCCCCGCCGGGCTTCCTGCGGCTTTATCCTCTATC ATAGGCGGCGGTGCCACCAACATCAACAATATGAACTGA
AA sequence Show only first row Show all	>Lus10020023 pacid=23156153 polypeptide=Lus10020023 locus=Lus10020023.g ID=Lus10020023.BGIv1.0 annot-version=v1.0 MHMLSQPQQQQQQNPAPPPTNHPHQPVARQFSERGPPSSTETESSSDERTRSESSPRNEMGTRTTSGNKAVVVDHEYCSRLESDQHNSQLGWINANTSNV GAAGSEIPKSMEQQPNTTTTTMRKARVSVRARSEAPMATITTHSHPPPSQWLPPQKPPPAPATMLLSGSTSTTDVHAPTTTSTTTHDLLTANLLSRAILP QPNNNHVATISASAPFPTVTLDLTTRGQPVYYNQSKFSGLQLSHQQYPADRSVMPMMMLPPPPVQASLTESVSAATAAPLPSFHRDYTPPAGLPAALSSI IGGGATNINNMN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G04450	WRKY	ATWRKY42, WRKY4...	WRKY family transcription fact...		Lus10020023 [exp]	0	1
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10021314 [exp]	1.7	0.9966
					Lus10041163 [exp]	2.4	0.9955
AT3G48180			unknown protein		Lus10043469 [exp]	2.6	0.9924
AT4G04450	WRKY	ATWRKY42, WRKY4...	WRKY family transcription fact...		Lus10015546 [exp]	3.5	0.9929
AT5G42830			HXXXD-type acyl-transferase fa...		Lus10024809 [exp]	4.0	0.9928
AT1G29860	WRKY	ATWRKY71, WRKY7...	WRKY DNA-binding protein 71 (....		Lus10004612 [exp]	4.0	0.9865
AT1G66160		ATCMPG1	"CYS, MET, PRO, and GLY protei...		Lus10040124 [exp]	5.7	0.9923
AT2G42010		PLDBETA1	phospholipase D beta 1 (.1)		Lus10006718 [exp]	6.4	0.9815
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Lus10027614 [exp]	6.9	0.9843
AT5G01250			alpha 1,4-glycosyltransferase ...		Lus10027770 [exp]	7.2	0.9839

Compare expression of checked genes

Lus10020023 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.