Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11910 733 / 0 ATAPA1, APA1 aspartic proteinase A1 (.1) AT1G62290 716 / 0 Saposin-like aspartyl protease family protein (.1.2) AT4G04460 668 / 0 Saposin-like aspartyl protease family protein (.1.2) AT1G69100 183 / 4e-53 Eukaryotic aspartyl protease family protein (.1) AT4G22050 181 / 3e-52 Eukaryotic aspartyl protease family protein (.1) AT3G12700 44 / 0.0002 Eukaryotic aspartyl protease family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015547 [exp] 925 / 0 AT1G11910 742 / 0.0 aspartic proteinase A1 (.1) Lus10022957 [exp] 728 / 0 AT1G11910 791 / 0.0 aspartic proteinase A1 (.1) Lus10021552 [exp] 721 / 0 AT1G11910 782 / 0.0 aspartic proteinase A1 (.1) Lus10032636 [exp] 686 / 0 AT1G11910 735 / 0.0 aspartic proteinase A1 (.1) Lus10043112 [exp] 601 / 0 AT1G11910 639 / 0.0 aspartic proteinase A1 (.1) Lus10035285 [exp] 585 / 0 AT1G11910 619 / 0.0 aspartic proteinase A1 (.1) Lus10030041 [exp] 509 / 2e-178 AT1G11910 535 / 0.0 aspartic proteinase A1 (.1) Lus10019309 [exp] 49 / 6e-06 AT5G43100 712 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10011513 [exp] 48 / 2e-05 AT5G43100 687 / 0.0 Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G007600 [exp] 756 / 0 AT1G11910 779 / 0.0 aspartic proteinase A1 (.1) Potri.011G007600 [exp] 756 / 0 AT1G11910 721 / 0.0 aspartic proteinase A1 (.1) Potri.001G356900 [exp] 719 / 0 AT1G11910 800 / 0.0 aspartic proteinase A1 (.1) Potri.013G002200 [exp] 601 / 0 AT1G11910 622 / 0.0 aspartic proteinase A1 (.1) Potri.002G228300 [exp] 558 / 0 AT1G11910 604 / 0.0 aspartic proteinase A1 (.1) Potri.005G002800 [exp] 555 / 0 AT1G11910 604 / 0.0 aspartic proteinase A1 (.1) Potri.010G003400 [exp] 509 / 3e-178 AT1G62290 548 / 0.0 Saposin-like aspartyl protease family protein (.1.2) Potri.005G144600 [exp] 52 / 1e-06 AT5G43100 729 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.018G014600 [exp] 49 / 7e-06 AT5G10770 371 / 1e-124 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [flax] [poplar] Peptidase_AA PF00026 [flax] [poplar] Asp Eukaryotic aspartyl protease CL0129 [flax] [poplar] PF03489 [flax] [poplar] SapB_2 Saposin-like type B, region 2 CL0129 [flax] [poplar] PF05184 [flax] [poplar] SapB_1 Saposin-like type B, region 1
Representative CDS sequence Show only first row Show all	>Lus10020024 pacid=23156139 polypeptide=Lus10020024 locus=Lus10020024.g ID=Lus10020024.BGIv1.0 annot-version=v1.0 ATGGTGTTGGGTAAGGGTAAGGAGGGGAAAATAAAGCTGGTGAGGATTGGATTGAAGAAGTTGAACTTCGATCAAAACAACAGAATCGCTGCTAGATTGG GGGCACGCAAGGCGCTCAAGGGTTCACATAATAAGAAGGCGAAACATGGCGGGGAGGAAGCAGGAGGGGACACGGACATTGTGGCCTTGAAGAATTACTT GGATGCTCAGTACTATGGGGAGATTGGGGTTGGCACTCCTCCTCAGAAGTTCACTGTCATTTTTGACACTGGCAGCTCCAACTTGTGGGTTCCCTCTGCT AAATGCTACTTCTCTCTCTCCTGCTTTGTGCATGCCAAGTACAAGTCCAGCCAATCTAGTACATACCAGAAAAATGGCAAATCCGCTGAGATCCAGTACG GTACTGGAGCAATTGCCGGATTCTTTAGTGTTGACAGCGTGAAAGTTGGTAACCTCGTGGTAAAAGATCAGGAGTTCATTGAGGCAACTAGGGAGCCTGG AGTCACTTTCTTGATGGCCAAATTCGATGGTATCCTGGGACTTGGATTTCGTGAAATTTCAGTTGGAGATGCTGTCCCTGTCTGGGACAACATGATGAAA CAAGGGCTTATCAAGGAGCCTGTATTCTCCTTCTGGCTCAACCGCCATGTTGGAGATGAGGAAGGGGGTGAAATTGTCTTCGGCGGGGTCGATCCAAATC ATTTCAAGGGAAAGCACACATATGTTCCTGTGACTAAAAAAGGTTACTGGCAGTTTGACATGGGTGATGTCCTCATAGGTGGCAAACCAACTGGTTATTG CAGCCATGGGTGTTCAGCAATCGCAGATTCGGGAACTTCCTTGTTGGCTGGTCCATCGACTGTGATTACCATGATCAATAAAGCAATTGGAGCTTCTGGA GTTGCTAGCCAGGAATGCAAAACTGTTGTTGCAGAATATGGACGCACCATTATCGATCTACTTTTGGCCGAGGCAGGACCAAAGAAGATTTGCTCTCAAA TTGGTCTCTGCGCATTTGATGGAAAGAAAAGCGTTGGCATGGATATCCAGAGTGTGGTGGACGAGGGCAATGAGAGGTCATCTGTAGTTTCCAACGATGC TGCCTGCTCAGCTTGTGAAATGGCGGTAGTGTGGATCCAAAATCGGTTGATGCAGAACCAGACCCAAGAACGAATTCTAGACTATGTCGACGAGCTTTGC GATCGAATGCCAAGTGCGTTGGGAGAGTCAGCAGTGGAATGTGGAAGTCTTAGTACTATGCCAACCGTATCCTTCACCATCGCAGGAAAGAAATTCGATC TGCTACCAGAAGAGTATATATTGAAGGTGGGTGAGGGTTCAGCAGCTCAGTGCATCAGTGGGTTTACCGCTTTGGATATTCCTCCTCCCAGGGGTCCTCT CTGGATACTGGGAGATATTTTCATGGGACGGTACCACACAGTGTTCGACCATGGAAATATGCAGGTTGGTTTTGCAGAAGCAGCATAG
AA sequence Show only first row Show all	>Lus10020024 pacid=23156139 polypeptide=Lus10020024 locus=Lus10020024.g ID=Lus10020024.BGIv1.0 annot-version=v1.0 MVLGKGKEGKIKLVRIGLKKLNFDQNNRIAARLGARKALKGSHNKKAKHGGEEAGGDTDIVALKNYLDAQYYGEIGVGTPPQKFTVIFDTGSSNLWVPSA KCYFSLSCFVHAKYKSSQSSTYQKNGKSAEIQYGTGAIAGFFSVDSVKVGNLVVKDQEFIEATREPGVTFLMAKFDGILGLGFREISVGDAVPVWDNMMK QGLIKEPVFSFWLNRHVGDEEGGEIVFGGVDPNHFKGKHTYVPVTKKGYWQFDMGDVLIGGKPTGYCSHGCSAIADSGTSLLAGPSTVITMINKAIGASG VASQECKTVVAEYGRTIIDLLLAEAGPKKICSQIGLCAFDGKKSVGMDIQSVVDEGNERSSVVSNDAACSACEMAVVWIQNRLMQNQTQERILDYVDELC DRMPSALGESAVECGSLSTMPTVSFTIAGKKFDLLPEEYILKVGEGSAAQCISGFTALDIPPPRGPLWILGDIFMGRYHTVFDHGNMQVGFAEAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Lus10020024 [exp]	0	1
AT4G24460		CLT2	CRT (chloroquine-resistance tr...		Lus10028858 [exp]	1.0	0.9656
AT2G14095			unknown protein		Lus10035649 [exp]	2.8	0.9542
AT3G02430			Protein of unknown function (D...		Lus10036581 [exp]	3.3	0.9292
AT1G05680		UGT74E2	Uridine diphosphate glycosyltr...		Lus10029469 [exp]	3.7	0.9174
AT1G53210			sodium/calcium exchanger famil...		Lus10033629 [exp]	4.5	0.9437
AT1G70670		AtCLO4	Arabidopsis thaliana caleosin ...		Lus10014588 [exp]	4.6	0.9485
AT1G54730			Major facilitator superfamily ...		Lus10029960 [exp]	4.9	0.9447
AT2G01300			unknown protein		Lus10004062 [exp]	5.7	0.9387
AT5G50260		CEP1	cysteine endopeptidase 1, Cyst...		Lus10018083 [exp]	6.0	0.9339
AT1G11190		ENDO1, BFN1	ENDONUCLEASE 1, bifunctional n...		Lus10011232 [exp]	6.8	0.9024

Compare expression of checked genes

Lus10020024 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.