Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11905 194 / 1e-62 B-cell receptor-associated protein 31-like (.1.2) AT5G42570 192 / 7e-62 B-cell receptor-associated 31-like (.1) AT5G48660 101 / 2e-26 B-cell receptor-associated protein 31-like (.1) AT3G07190 97 / 1e-24 B-cell receptor-associated protein 31-like (.1) AT3G20450 87 / 8e-22 B-cell receptor-associated protein 31-like (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000048 [exp] 192 / 9e-64 AT1G11905 81 / 3e-20 B-cell receptor-associated protein 31-like (.1.2) Lus10031546 [exp] 167 / 4e-52 AT5G42570 287 / 3e-99 B-cell receptor-associated 31-like (.1) Lus10035283 [exp] 159 / 4e-49 AT5G42570 244 / 9e-83 B-cell receptor-associated 31-like (.1) Lus10030043 [exp] 158 / 7e-49 AT5G42570 241 / 1e-81 B-cell receptor-associated 31-like (.1) Lus10015132 [exp] 150 / 2e-45 AT5G42570 258 / 7e-88 B-cell receptor-associated 31-like (.1) Lus10038188 [exp] 120 / 9e-34 AT3G07190 265 / 1e-90 B-cell receptor-associated protein 31-like (.1) Lus10011842 [exp] 117 / 1e-32 AT5G48660 270 / 1e-92 B-cell receptor-associated protein 31-like (.1) Lus10022777 [exp] 113 / 4e-31 AT5G48660 271 / 9e-93 B-cell receptor-associated protein 31-like (.1) Lus10025914 [exp] 46 / 5e-07 AT3G07190 66 / 7e-15 B-cell receptor-associated protein 31-like (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G007200 [exp] 249 / 3e-84 AT5G42570 278 / 1e-95 B-cell receptor-associated 31-like (.1) Potri.004G007900 [exp] 240 / 6e-81 AT5G42570 259 / 3e-88 B-cell receptor-associated 31-like (.1) Potri.014G154800 [exp] 153 / 1e-46 AT5G42570 152 / 2e-46 B-cell receptor-associated 31-like (.1) Potri.014G191500 [exp] 119 / 2e-33 AT5G48660 237 / 2e-79 B-cell receptor-associated protein 31-like (.1) Potri.002G245300 [exp] 117 / 1e-32 AT3G07190 239 / 3e-80 B-cell receptor-associated protein 31-like (.1) Potri.011G089100 [exp] 108 / 2e-30 AT5G42570 140 / 5e-43 B-cell receptor-associated 31-like (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05529 [flax] [poplar] Bap31 Bap31/Bap29 transmembrane region
Representative CDS sequence Show only first row Show all	>Lus10020025 pacid=23156253 polypeptide=Lus10020025 locus=Lus10020025.g ID=Lus10020025.BGIv1.0 annot-version=v1.0 ATGATTCAGCTGCTGCTCACAGTTCTGTTTTCGCAGATGGCGTTCATAATAGTCCTCCTGTTCAAGAGCCCTCTGCAGAAACTAGCAATCATGGGGCTAG ATCGGTTAAAGCGCGGCCGCGGCCCCATCGTAGTCTCCACCGTCGCCGGAACAGTGGTGCTGGTATTGATGTCGAGTGTTTATAGCATGGCTGACATCCA GAAGCGGTGGACTGAAGAAGGCGCCGTCATCAGCCCTACAGAGCAGGTCCTCATGGCCACTCACCTCCTCGAAGCCTCTCTCATGGGGGGAGGATTGTTC CTGGCGCTGATGATCGACAGGCTACACCACTACATGAGAGAGCTTCGTATGCGGAGGAAGAACATGGATGCTCTGAGGAAGCAGACCCAGAAAAAGTCCC TGCAGGAAGAAATCACCATGCTTCGGGGCAAGCTGAAGCAGCTGGAAATTGAGATGGAAATCAAGACCAAAGAGGTCAACACTTCAGAAGTCAACGTAAT TGCTTTGAAGAAGCAATCGGATGGGTTCCTGCTAGAGTATGATCGTCTACGGGACGAAAATAAGTTCTTGAGGAACAAGTTGAAGTCTCTGGATTTAAAA TTCTCACGTTCAGGGAGCAAAAAGGATTCGTAA
AA sequence Show only first row Show all	>Lus10020025 pacid=23156253 polypeptide=Lus10020025 locus=Lus10020025.g ID=Lus10020025.BGIv1.0 annot-version=v1.0 MIQLLLTVLFSQMAFIIVLLFKSPLQKLAIMGLDRLKRGRGPIVVSTVAGTVVLVLMSSVYSMADIQKRWTEEGAVISPTEQVLMATHLLEASLMGGGLF LALMIDRLHHYMRELRMRRKNMDALRKQTQKKSLQEEITMLRGKLKQLEIEMEIKTKEVNTSEVNVIALKKQSDGFLLEYDRLRDENKFLRNKLKSLDLK FSRSGSKKDS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11905			B-cell receptor-associated pro...		Lus10020025 [exp]	0	1
AT3G57870		SCE1A, SCE1, AH...	SUMO CONJUGATING ENZYME 1A, EM...		Lus10009376 [exp]	1.0	0.9685
AT5G49710			unknown protein		Lus10015965 [exp]	2.4	0.9628
AT2G02800		Kin2, APK2B	protein kinase 2B (.1.2)		Lus10021489 [exp]	2.8	0.9655
AT2G02800		Kin2, APK2B	protein kinase 2B (.1.2)		Lus10022591 [exp]	3.9	0.9605
AT4G18360			Aldolase-type TIM barrel famil...		Lus10038507 [exp]	4.5	0.9510
AT1G70520		ASG6, CRK2	ALTERED SEED GERMINATION 6, cy...		Lus10030901 [exp]	5.3	0.9532
AT1G78895			Reticulon family protein (.1)		Lus10033352 [exp]	8.4	0.9454
AT1G21000			PLATZ transcription factor fam...		Lus10002700 [exp]	9.4	0.9609
AT3G55960			Haloacid dehalogenase-like hyd...		Lus10004810 [exp]	11.5	0.9470
AT4G16520		ATG8F	autophagy 8f, Ubiquitin-like s...		Lus10000733 [exp]	11.5	0.9538

Compare expression of checked genes

Lus10020025 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.