Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20630 190 / 3e-61 ATGER3, GLP3A, GLP3B, GLP3 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) AT1G72610 179 / 1e-56 ATGER1, GLP1 A. THALIANA GERMIN-LIKE PROTEIN 1, germin-like protein 1 (.1) AT3G62020 148 / 1e-44 GLP10 germin-like protein 10 (.1.2) AT3G05930 145 / 1e-43 GLP8 germin-like protein 8 (.1) AT1G02335 144 / 4e-43 GL22 germin-like protein subfamily 2 member 2 precursor (.1) AT5G26700 137 / 2e-40 RmlC-like cupins superfamily protein (.1) AT1G09560 136 / 5e-40 GLP5 germin-like protein 5 (.1) AT5G39160 136 / 8e-40 RmlC-like cupins superfamily protein (.1.2.3) AT5G39190 135 / 2e-39 ATGER2, GLP2A GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) AT5G39130 134 / 6e-39 RmlC-like cupins superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015644 [exp] 350 / 4e-124 AT5G20630 192 / 6e-62 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10037663 [exp] 317 / 6e-111 AT5G20630 209 / 2e-68 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10020851 [exp] 310 / 4e-108 AT5G20630 181 / 2e-57 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10037661 [exp] 283 / 9e-98 AT5G20630 182 / 6e-58 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10015643 [exp] 277 / 2e-95 AT5G20630 182 / 4e-58 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10037664 [exp] 240 / 1e-80 AT5G20630 198 / 3e-64 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10036296 [exp] 218 / 8e-72 AT5G20630 213 / 3e-70 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10037662 [exp] 204 / 5e-68 AT5G20630 124 / 2e-36 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10002795 [exp] 206 / 2e-67 AT1G72610 261 / 3e-89 A. THALIANA GERMIN-LIKE PROTEIN 1, germin-like protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G065266 [exp] 207 / 6e-68 AT1G72610 240 / 6e-81 A. THALIANA GERMIN-LIKE PROTEIN 1, germin-like protein 1 (.1) Potri.001G169000 [exp] 205 / 3e-67 AT1G72610 241 / 2e-81 A. THALIANA GERMIN-LIKE PROTEIN 1, germin-like protein 1 (.1) Potri.006G142600 [exp] 189 / 5e-61 AT5G20630 270 / 6e-93 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Potri.011G163800 [exp] 139 / 3e-41 AT5G39130 255 / 1e-86 RmlC-like cupins superfamily protein (.1) Potri.011G162200 [exp] 137 / 1e-40 AT5G39190 246 / 4e-83 GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) Potri.011G163216 [exp] 137 / 2e-40 AT5G39160 257 / 2e-87 RmlC-like cupins superfamily protein (.1.2.3) Potri.011G163300 [exp] 137 / 2e-40 AT5G39160 257 / 2e-87 RmlC-like cupins superfamily protein (.1.2.3) Potri.011G163200 [exp] 135 / 1e-39 AT3G05950 266 / 5e-91 RmlC-like cupins superfamily protein (.1) Potri.011G162932 [exp] 135 / 1e-39 AT3G05950 268 / 1e-91 RmlC-like cupins superfamily protein (.1) Potri.015G068200 [exp] 134 / 3e-39 AT1G18980 247 / 2e-83 RmlC-like cupins superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF00190 [flax] [poplar] Cupin_1 Cupin
Representative CDS sequence Show only first row Show all	>Lus10020026 pacid=23156129 polypeptide=Lus10020026 locus=Lus10020026.g ID=Lus10020026.BGIv1.0 annot-version=v1.0 ATGCCGTTTCATCTTCATGAATTCTTCTTCATTGCCATGTTCCTCGTCATATCATGCTGCTACTCCGCGCGCGCCGCGGATTTTTGCGTAGCCGATCTAT CTCTCCAAACCGCATCCGGCTACGTGTGCAAGGACCCCGCCAAAGTCACTGCCGCCGACTTCCTATTCACCGGAATATCCCAACCGGTCAACACCACTAA CCTCTTCAGGGCAGCTGCGTCCCCGGCCACCGTCCGGCAATTCCCGGCCCTGAATGGCTTGGGAATCTCCATGGCTCGTGCAGATTTCGCTCCCGGCGGC GTGAGCCCTCTCCACACCCATCCGGAGGCTACGGAGATTGTATATCTGCTCGAAGGCACCCTCACGGTGGGGTTCGTCACCGCCGGGACGAACAAGGTGT ACCTGAATAAGATTAATAAAGGGGAAGTGACGGTGTTTCCCCGAGGGACGCCGCATTTCATTGTGAATCTGGACACCGCCCAGCCCGCGGTGGCGGTTTT CGCGTTTAGCAGTCCCGATCCGGGGTTTTTGGTGGTCAGTTTCGCGCTCTTTGGTAATGATCTTCCGTCGGCTTTGGTGGAGAAGTCCACCGGCATTGCC CAACCTGAAGTGAAAAGACTTAAAGCTCTTCTCGGTGGTTCTGGTTAA
AA sequence Show only first row Show all	>Lus10020026 pacid=23156129 polypeptide=Lus10020026 locus=Lus10020026.g ID=Lus10020026.BGIv1.0 annot-version=v1.0 MPFHLHEFFFIAMFLVISCCYSARAADFCVADLSLQTASGYVCKDPAKVTAADFLFTGISQPVNTTNLFRAAASPATVRQFPALNGLGISMARADFAPGG VSPLHTHPEATEIVYLLEGTLTVGFVTAGTNKVYLNKINKGEVTVFPRGTPHFIVNLDTAQPAVAVFAFSSPDPGFLVVSFALFGNDLPSALVEKSTGIA QPEVKRLKALLGGSG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20630		ATGER3, GLP3A, ...	GERMIN-LIKE PROTEIN 3, ARABIDO...		Lus10020026 [exp]	0	1
AT3G49220			Plant invertase/pectin methyle...		Lus10022412 [exp]	7.2	0.7765
AT1G48030		mtLPD1	mitochondrial lipoamide dehydr...		Lus10037825 [exp]	8.1	0.7576
AT3G06240			F-box family protein (.1)		Lus10027824 [exp]	14.7	0.7197
AT4G33010		ATGLDP1	glycine decarboxylase P-protei...		Lus10024989 [exp]	16.2	0.7625
AT5G20280		SPSA1, ATSPS1F	sucrose-phosphate synthase A1,...		Lus10038119 [exp]	18.5	0.7287
AT1G69530		ATHEXPALPHA1.2,...	EXPANSIN 1, expansin A1 (.1.2....		Lus10036763 [exp]	22.8	0.7189
AT1G55790			Domain of unknown function (DU...		Lus10016345 [exp]	25.0	0.6892
AT4G09810			Nucleotide-sugar transporter f...		Lus10005790 [exp]	28.5	0.7222
AT1G62510			Bifunctional inhibitor/lipid-t...		Lus10002927 [exp]	29.5	0.7249
AT5G11110		SPSA2, KNS2, AT...	sucrose-phosphate synthase A2,...		Lus10008056 [exp]	34.0	0.7124

Compare expression of checked genes

Lus10020026 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.