Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04480 259 / 1e-82 unknown protein AT4G22030 261 / 7e-81 F-box family protein with a domain of unknown function (DUF295) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020028 [exp] 547 / 0 AT4G04480 335 / 2e-112 unknown protein Lus10015549 [exp] 200 / 2e-56 AT4G22130 972 / 0.0 STRUBBELIG-receptor family 8 (.1.2) Lus10015548 [exp] 176 / 6e-54 AT4G04480 106 / 4e-28 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G009500 [exp] 313 / 2e-103 AT4G22030 410 / 8e-139 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.004G008800 [exp] 311 / 1e-102 AT4G22030 395 / 6e-133 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.004G009000 [exp] 310 / 5e-102 AT4G22030 392 / 8e-132 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.004G009300 [exp] 308 / 3e-101 AT4G22030 390 / 7e-131 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.011G006900 [exp] 305 / 5e-100 AT4G22030 362 / 9e-120 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.011G007000 [exp] 304 / 1e-99 AT4G22030 367 / 8e-122 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.004G008000 [exp] 271 / 9e-87 AT4G04480 333 / 2e-111 unknown protein Potri.004G009100 [exp] 270 / 2e-86 AT4G04480 332 / 5e-111 unknown protein Potri.004G009400 [exp] 269 / 4e-86 AT4G04480 327 / 3e-109 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020029 pacid=23156227 polypeptide=Lus10020029 locus=Lus10020029.g ID=Lus10020029.BGIv1.0 annot-version=v1.0 ATGGCTTACAGTTACTATAGTTCTCTGCATCTACGGCCGACATCCACTCTTCCTATCTCTAAATCTTACCCGTCTTCTTCTTCTTCTTCTTGCCGGGCAG CCATCTCCCTTCCGGCGATCCCAATCTGCCTCCCCAAAATCCCCACTCTCACTACTGCTCCATCTGCAGCACCTCCAGTATTTACCCTTCCCAGTTCCAC AACCCACAAGGATAACCTACTGTCCACTATTCCTACTACTATTACAGACACGGCCGCGGCGGCGACAACGCAGCTCCTCTATAACGCAGTCCTGGAAGCC ATCGCCGACAGGATAGAAATGCACAACAACGTCGGCATCCAACGCGACAACTGGAACTCCCTCCTCCTCAACTCCATCAACATGTCCATCCTTGCAGCCA CCACCATCACCGCCGCAACGGCCGCCGCCGGAGGCGATAGTAGCCACCTACCTTCAGCCATCGGATCAACCATTATATTCTCCGCCGCCACGGGTCTCCT CATGCTCATGAACACAATCCAACCCTCCCAGCTTGCAGAAGAACAGCGCAACGCCACCAGATTGTTCAAACAACTCCAATCCCAATTATTACAAACCAAA CCGGTGGGGTCAATCTCAGAGTCCGACGTGGAGGACGCGGTGGAGAAGGTGTTAGCCCTTGACCGCGCTTACCCGCTCCCTCTCCTCGGTGGCAAAATGA TCCCCAAGTTCCCCGCCCAATTCCAACCCGCCGTTTGGTGGCCCAAACGACAATCCAGTACTACTACTAGCACGAGAACTAGTACGACTAGTTCTCGTAT TAATAGTACCGGGACCACCAACGGGTGGACTAAGGAGCTAGAGACCGAGATGAGGCAAGTGTTGGGAGTGGTAAGAGGTCAAGACAAGGAGGATTACATG AAGCTTGGAAGCATGGTGCTCAAGCTGAACAAGGCGTTGGCTGTGGCGGGACCTGCTCTCACCGGCATTGCTGCGGTAGCCTCGGAAGTTGGATTAGCGT CCGTGGCGGTGGGTGCTGGTGCTATGGCGGCGGCTGTCAACACATTGGAACACGGGGGGCAGATCGGGATGGTGGTGGAGATGTACAGGAATTGCGCGGG GTTTTTCGATCATATGGAGGAGTCCATCGAGGCGAGTGTAGACGAGTCGGATGTGGAGAAGAGGGAAAGCGGACGTGTGTTGGAAATGAAGGTGGCGTTG GCACTTGGGAGAAGTCCGTCGAAGCTAAGAGAGCTTGCTTCTAAGTGCAGTTACAGTCAAGATGAAGGGACTCCCTTGGATGAGTTTGCCAGCAAGCTCT TCTAA
AA sequence Show only first row Show all	>Lus10020029 pacid=23156227 polypeptide=Lus10020029 locus=Lus10020029.g ID=Lus10020029.BGIv1.0 annot-version=v1.0 MAYSYYSSLHLRPTSTLPISKSYPSSSSSSCRAAISLPAIPICLPKIPTLTTAPSAAPPVFTLPSSTTHKDNLLSTIPTTITDTAAAATTQLLYNAVLEA IADRIEMHNNVGIQRDNWNSLLLNSINMSILAATTITAATAAAGGDSSHLPSAIGSTIIFSAATGLLMLMNTIQPSQLAEEQRNATRLFKQLQSQLLQTK PVGSISESDVEDAVEKVLALDRAYPLPLLGGKMIPKFPAQFQPAVWWPKRQSSTTTSTRTSTTSSRINSTGTTNGWTKELETEMRQVLGVVRGQDKEDYM KLGSMVLKLNKALAVAGPALTGIAAVASEVGLASVAVGAGAMAAAVNTLEHGGQIGMVVEMYRNCAGFFDHMEESIEASVDESDVEKRESGRVLEMKVAL ALGRSPSKLRELASKCSYSQDEGTPLDEFASKLF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G22030			F-box family protein with a do...		Lus10020029 [exp]	0	1
AT4G04480			unknown protein		Lus10020028 [exp]	1.0	0.9922
AT3G11840		PUB24	plant U-box 24 (.1)		Lus10004191 [exp]	6.9	0.9784
AT5G06740			Concanavalin A-like lectin pro...		Lus10004166 [exp]	9.6	0.9530
AT3G09520		ATEXO70H4	exocyst subunit exo70 family p...		Lus10024438 [exp]	9.9	0.9809
AT1G64480		CBL8	calcineurin B-like protein 8 (...		Lus10023069 [exp]	12.0	0.9754
AT2G38870			Serine protease inhibitor, pot...		Lus10018786 [exp]	13.4	0.9769
AT2G42350			RING/U-box superfamily protein...		Lus10005104 [exp]	15.2	0.9675
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Lus10034229 [exp]	15.9	0.9736
AT1G08080		ATACA7, ACA7	A. THALIANA ALPHA CARBONIC ANH...		Lus10021455 [exp]	16.3	0.9757
AT2G42360			RING/U-box superfamily protein...		Lus10002194 [exp]	17.3	0.9759

Compare expression of checked genes

Lus10020029 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.