Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22130 918 / 0 SRF8 STRUBBELIG-receptor family 8 (.1.2) AT1G53730 588 / 0 SRF6 STRUBBELIG-receptor family 6 (.1.2) AT3G14350 385 / 4e-124 SRF7 STRUBBELIG-receptor family 7 (.1.2.3) AT1G78980 363 / 2e-115 SRF5 STRUBBELIG-receptor family 5 (.1) AT2G20850 363 / 1e-114 SRF1 STRUBBELIG-receptor family 1 (.1) AT4G03390 359 / 4e-113 SRF3 STRUBBELIG-receptor family 3 (.1) AT1G11130 314 / 3e-96 SRF9, SCM, SUB STRUBBELIG-RECEPTOR FAMILY 9, SCRAMBLED, Leucine-rich repeat protein kinase family protein (.1) AT3G13065 303 / 8e-93 SRF4 STRUBBELIG-receptor family 4 (.1) AT5G06820 281 / 3e-84 SRF2 STRUBBELIG-receptor family 2 (.1) AT5G02800 252 / 3e-77 CDL1 CDG1-like 1, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015549 [exp] 1226 / 0 AT4G22130 972 / 0.0 STRUBBELIG-receptor family 8 (.1.2) Lus10039795 [exp] 521 / 3e-176 AT4G03390 892 / 0.0 STRUBBELIG-receptor family 3 (.1) Lus10033711 [exp] 519 / 5e-175 AT4G03390 825 / 0.0 STRUBBELIG-receptor family 3 (.1) Lus10003926 [exp] 419 / 8e-137 AT1G53730 885 / 0.0 STRUBBELIG-receptor family 6 (.1.2) Lus10037464 [exp] 417 / 8e-137 AT1G53730 824 / 0.0 STRUBBELIG-receptor family 6 (.1.2) Lus10031628 [exp] 367 / 7e-116 AT4G03390 870 / 0.0 STRUBBELIG-receptor family 3 (.1) Lus10033333 [exp] 347 / 1e-109 AT1G78980 803 / 0.0 STRUBBELIG-receptor family 5 (.1) Lus10018563 [exp] 345 / 7e-109 AT4G03390 773 / 0.0 STRUBBELIG-receptor family 3 (.1) Lus10034790 [exp] 342 / 6e-108 AT1G78980 768 / 0.0 STRUBBELIG-receptor family 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G005301 [exp] 1022 / 0 AT4G22130 906 / 0.0 STRUBBELIG-receptor family 8 (.1.2) Potri.011G010500 [exp] 991 / 0 AT4G22130 916 / 0.0 STRUBBELIG-receptor family 8 (.1.2) Potri.007G002600 [exp] 571 / 0 AT1G78980 499 / 1e-168 STRUBBELIG-receptor family 5 (.1) Potri.001G161600 [exp] 419 / 4e-137 AT1G53730 590 / 0.0 STRUBBELIG-receptor family 6 (.1.2) Potri.003G073700 [exp] 414 / 4e-135 AT1G53730 575 / 0.0 STRUBBELIG-receptor family 6 (.1.2) Potri.019G103900 [exp] 382 / 1e-121 AT4G03390 801 / 0.0 STRUBBELIG-receptor family 3 (.1) Potri.014G001200 [exp] 372 / 5e-119 AT1G78980 817 / 0.0 STRUBBELIG-receptor family 5 (.1) Potri.013G144600 [exp] 364 / 4e-115 AT4G03390 783 / 0.0 STRUBBELIG-receptor family 3 (.1) Potri.004G037000 [exp] 350 / 4e-110 AT4G03390 645 / 0.0 STRUBBELIG-receptor family 3 (.1) Potri.011G045600 [exp] 346 / 2e-108 AT4G03390 617 / 0.0 STRUBBELIG-receptor family 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10020030 pacid=23156189 polypeptide=Lus10020030 locus=Lus10020030.g ID=Lus10020030.BGIv1.0 annot-version=v1.0 ATGCTGCTCCTTCTTCCACTATTCCTCTTCCTCCTTCATCCCGTTCACTCCACTACTGATTCCACCGACGTTCAAGCTCTGCAGGTGGTGTACAGCTCCC TTAACAGCCCTTCCCAGCTAACCAATTGGAAGAGCAATGGCGGGGATCCCTGTGCCGAGTCTTGGAAGGGTGTCACTTGCCAGGGCTCAGCTGTTGTTTC TCTCCAGATTTCCGGTTTGGGGCTCACTGGGTCAATGGGTTACTTGCTTTCCAGCCTTACCTCCTTGAAAACTATGGATCTGAGTGACAACAACTTCCGC GATTCGATTCCTTATCAAATGCCGCCCAATCTCACCTCCTTAAATTTGGCCAGAAACAACTTGTCTGGAAATCTGCCCTATTCCTTCTCTACCATGGCTT CTCTCAGTTACTTGAATGTAAGCGGCAATTCCCTTTCCCAAGCAGTTGGTGATGTGTTCACCAATCTTTCACTCCTGGAAACCCTTGATCTGTCTTTCAA CAACTTCAGCGGCGATCTTCCCGCATCATTTACTTCACTCACCAATCTTTCTACATTAGATGTACAGAACAATCAGCTGACCGGCTCTCTTAATTCTCTT ACTGCCCTTCCTTTGACTACCCTGAATGTTGCAAATAACCATTTTAATGGGTGGATCCCTCGAGAGCTCAGTTCAATTCCCAATTTTAAATTTGAAGGGA ATTCCTTTGACAATGGACCTGCTCCTCCTCCTCCACCGTTCACTTCTCCACCTCCCGGTAGGCCTCGTAACAACCGGAGTCGTCCAGGAGCAGGGGGCAC ACCTGCATCTCCATCCTCCAACGGCCAATCATCACAGTCATCCAAGGGGCTGTCAATAGGAGCTATTGTCGGCATAAGTCTAGGTTCTGCTTTCCTGGTT GGCATTCTTATAGTGCTAGTATTTTGCATCAGGAAAAGTAAAACAAAAGAAGTTGGTGTTATTGCTTCCAATGGGGAAAGTCATCCTGCCACCACAAATA ACATTCATTGCTGTTCCTCGGTAGTTCAAATGGAGATGCAAGAGCAGAGGATGAAGAACATGGCTGCTGTTACAGATGTCAAGGCCCTTGTAGCCGAAAA GTCTGCGATGGATAAGCTGCAAGGGCATTCTGGTTCTATCAAGAGAATGAGATCACCAATGACAGCTACTTCTTACACAGTTGCCACCCTGCAGACATCA ACAAATAGTTTTAGTCAAGAGTTTCTAATCGGAGAAGGTTCTCTGGGTCGTGTTTACAGAGCCGAGTTTCCTAATGGAAAGACAATGGCTGTGAAGAAGA TCGACAATGCAGCGCTATCACTACAAGAAGAAGACAACTTTCTTGAAGCTGTTTCAAACATGTCGCGGCTAAGGCACCCGAACATTGTGTCGATGGTGGG GTATTGTGTAGAGCACGGGCAGCGTCTTTTGGTTTATGAATATATTGGGAATGGAAACCTGCATGATATCCTGCACTTTGCTGATGATGACGGCAAGAAG TTGTCTTGGAATGCACGTGTCAGAGTAGCACTTGGCACTGCCAGGGCATTAGAGTACTTGCATGAAGTCTGCTTACCGTCAGTTGTACATAGAAACTTCA AATCAGCAAACATTTTGTTGGATGAAGAGCTAAATCCCCACTTATCCGACTGTGGTTTGGCTGCTTTGACACCAAATACAGAGAGACCTGTTTCGACTCA AGTGGTTGGTTCATTTGGTTACAGTGCTCCTGAATTTGCCTTCTTTGGAGTGGCCATGTTAGAGCTGTTGACTGGTAGAAAGCCGCTGGACAGTTCAAGG CCGAGGCCGGAGCAGTCACTTGTGAGATGGGCAACCCCGCAACTGCATGACATAGATGCATTATCGAAGATGGTTGATCCTGCATTGAACGGCATGTACC CTGCCAAATCCCTATCTCGTTTCGCAGACATAATCGCACTGTGTGTCCAGCCGGAACCAGAGTTTAGGCCACCAATGTCAGAAGTAGTGCAAGCACTAGT GAGGTTGGTGCAAAGGGCAAGTGTAGTGAAGAGGCGGTCCAGCGATGAATCCGGATTCTCGTACAGGACACCTGACCACGATGCTATTGATCTGTCGTTT TGA
AA sequence Show only first row Show all	>Lus10020030 pacid=23156189 polypeptide=Lus10020030 locus=Lus10020030.g ID=Lus10020030.BGIv1.0 annot-version=v1.0 MLLLLPLFLFLLHPVHSTTDSTDVQALQVVYSSLNSPSQLTNWKSNGGDPCAESWKGVTCQGSAVVSLQISGLGLTGSMGYLLSSLTSLKTMDLSDNNFR DSIPYQMPPNLTSLNLARNNLSGNLPYSFSTMASLSYLNVSGNSLSQAVGDVFTNLSLLETLDLSFNNFSGDLPASFTSLTNLSTLDVQNNQLTGSLNSL TALPLTTLNVANNHFNGWIPRELSSIPNFKFEGNSFDNGPAPPPPPFTSPPPGRPRNNRSRPGAGGTPASPSSNGQSSQSSKGLSIGAIVGISLGSAFLV GILIVLVFCIRKSKTKEVGVIASNGESHPATTNNIHCCSSVVQMEMQEQRMKNMAAVTDVKALVAEKSAMDKLQGHSGSIKRMRSPMTATSYTVATLQTS TNSFSQEFLIGEGSLGRVYRAEFPNGKTMAVKKIDNAALSLQEEDNFLEAVSNMSRLRHPNIVSMVGYCVEHGQRLLVYEYIGNGNLHDILHFADDDGKK LSWNARVRVALGTARALEYLHEVCLPSVVHRNFKSANILLDEELNPHLSDCGLAALTPNTERPVSTQVVGSFGYSAPEFAFFGVAMLELLTGRKPLDSSR PRPEQSLVRWATPQLHDIDALSKMVDPALNGMYPAKSLSRFADIIALCVQPEPEFRPPMSEVVQALVRLVQRASVVKRRSSDESGFSYRTPDHDAIDLSF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G22130		SRF8	STRUBBELIG-receptor family 8 (...		Lus10020030 [exp]	0	1
AT4G22130		SRF8	STRUBBELIG-receptor family 8 (...		Lus10015549 [exp]	1.0	0.9547
AT5G01020			Protein kinase superfamily pro...		Lus10036762 [exp]	2.4	0.8398
AT3G57400			unknown protein		Lus10042067 [exp]	9.8	0.7861
AT5G64290		DCT, DIT2.1	dicarboxylate transport 2.1 (....		Lus10023779 [exp]	13.4	0.7928
AT4G07960		ATCSLC12	CELLULOSE-SYNTHASE LIKE C12, C...		Lus10007715 [exp]	14.5	0.7656
AT2G26730			Leucine-rich repeat protein ki...		Lus10017756 [exp]	18.8	0.7941
AT1G76160		SKS5	SKU5 similar 5 (.1)		Lus10034560 [exp]	19.6	0.7780
AT5G20590		TBL5	TRICHOME BIREFRINGENCE-LIKE 5 ...		Lus10027637 [exp]	19.8	0.7498
AT2G05810			ARM repeat superfamily protein...		Lus10035338 [exp]	20.2	0.7328
AT5G61250		ATGUS1	glucuronidase 1 (.1.2)		Lus10036962 [exp]	21.2	0.7678

Compare expression of checked genes

Lus10020030 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.