Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04320 563 / 0 malonyl-CoA decarboxylase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015550 [exp] 364 / 2e-124 AT4G04320 158 / 3e-45 malonyl-CoA decarboxylase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G010400 [exp] 625 / 0 AT4G04320 699 / 0.0 malonyl-CoA decarboxylase family protein (.1.2) Potri.004G005500 [exp] 615 / 0 AT4G04320 700 / 0.0 malonyl-CoA decarboxylase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0257 [flax] [poplar] Acetyltrans PF05292 [flax] [poplar] MCD Malonyl-CoA decarboxylase C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10020031 pacid=23156127 polypeptide=Lus10020031 locus=Lus10020031.g ID=Lus10020031.BGIv1.0 annot-version=v1.0 ATGAACAACAAGAAAGGATTGGCCATTTTAATGCGAGCCAGAATGAGGGCAGCGGCAGCAGCAGATGCTCCTCCTCCGGCAACCAACAACACTAACGCCA ACCTTTCCCTTACTGCCGTTGCTGCTGCTGCGAGGGAGAGTGAAGCAACTCGATCCCATGGCGATCCTCTCTCTAAACTACCGGTGAAGTCCGCCACTGT GACCGCTCCTCCTCAAAGAGGTCTCGATGTTGTTCGAGATGCAATGCACTCCGCCATATCGCTGAACAAAACTCAAGCCCTCGACGCTGTGCTTGATGTT TTCTCTCAGGGTTACGTTGGGCTCTCTCGTCATGATCGCCGCAACCTACTGCTCATCCTTGCTAAAGGCTATGATCTCAACCGGATTCATGCTCGTGAGC TCATGAACCAGCATCTCGGCCTCCACCTTCAGCTTACTGCTGGCGACGATGGAACTGAATCCAGTTCTCCTCATGATGAAGCCATGCTTTCTGCTTTCTA CCGCATCGAAAGAAACCTCAGACAGGCTCTCAAGCCTGCTTATGATGTCCTCTTTGAGCGACTTAACACTCACCCTGGCGGCTTGAGATTCCTCTCCAAC CTTCGTGCTGATGTATTGTCCATTCTTCAAGACGAAAATGTCGCATCTCTGCGGGCCTTAGACACCTGCTTGAAGGATAAACTTACAACTTGGCTTAGTC CTTTTGCGTTAGAGCTTCACCACATTACCTGGGACGACCCTGCTTCTTTGCTTGAGAAAATTGTGGCCTATGAGGCTGTACATCCTATAAGCAATCTCTT AGACCTCAAAAGACGTTTGGGGGAAGTTCTATGGGATGATCCTCCGACACCCGAATCTGAGGCTACGTGTGCATTATTTTATTCCATATCATCAACTCAG GCTGGCTTGGCAGGAATAAACCTTGGGAAGTTTCTTATTAAACGTGTGATCACATTGGTGATAAGGGATATGCCTCACATATCAATCTTTGCTACTCTAA GTCCCATTCCCGGATACACGCAATGGCTGCTGTCTAAGTTAGCGTCTCAGTCACATGCTTCATCAGGTGTATCTGAGTCCACTTTTGTGGAGAACTTACT TGAGCCAGATGAAGAAAGCCGCCTCATGAACTCCTCGTCGGAGACATGTGGAGGAAAAAGTGGCATGGAAGTGATGTTGAACATGCTGACATCGAGCACA TATGACTGGGCTTCCAATGCTGAAATGGTTTCAGCATTGAAGTCCCCGCTCATGAGACTATGTGCCAGGTACCTTTTGCAAGAGAAGAAGAGAGGCAAAG CCTTAGACTCTGTTGCGAACTTTCACCTGCAAAATGGAGCGATGATTGAGAGAATAAATTGGATGGCTGACCATTCGGAGAAAGGTCTTCGTCAAAGTGG AGGGATTATGGTAAATTATGTTTACAGGGTGGAGGAGATTGAGGAGAATGCGGAAGGTTATATCAGGGCCGGGAGCATACAGGCTTCCAAGGATGTCTGG TGCTACATCAAAGGTAATTTTGACATAATTTGA
AA sequence Show only first row Show all	>Lus10020031 pacid=23156127 polypeptide=Lus10020031 locus=Lus10020031.g ID=Lus10020031.BGIv1.0 annot-version=v1.0 MNNKKGLAILMRARMRAAAAADAPPPATNNTNANLSLTAVAAAARESEATRSHGDPLSKLPVKSATVTAPPQRGLDVVRDAMHSAISLNKTQALDAVLDV FSQGYVGLSRHDRRNLLLILAKGYDLNRIHARELMNQHLGLHLQLTAGDDGTESSSPHDEAMLSAFYRIERNLRQALKPAYDVLFERLNTHPGGLRFLSN LRADVLSILQDENVASLRALDTCLKDKLTTWLSPFALELHHITWDDPASLLEKIVAYEAVHPISNLLDLKRRLGEVLWDDPPTPESEATCALFYSISSTQ AGLAGINLGKFLIKRVITLVIRDMPHISIFATLSPIPGYTQWLLSKLASQSHASSGVSESTFVENLLEPDEESRLMNSSSETCGGKSGMEVMLNMLTSST YDWASNAEMVSALKSPLMRLCARYLLQEKKRGKALDSVANFHLQNGAMIERINWMADHSEKGLRQSGGIMVNYVYRVEEIEENAEGYIRAGSIQASKDVW CYIKGNFDII

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G04320			malonyl-CoA decarboxylase fami...		Lus10020031 [exp]	0	1
AT2G05590			TLD-domain containing nucleola...		Lus10014476 [exp]	1.0	0.8355
AT5G52560		ATUSP	UDP-sugar pyrophosphorylase (....		Lus10000971 [exp]	1.4	0.8098
AT3G55020			Ypt/Rab-GAP domain of gyp1p su...		Lus10040349 [exp]	4.9	0.7694
AT4G03020			transducin family protein / WD...		Lus10033996 [exp]	6.9	0.7788
					Lus10008674 [exp]	16.9	0.7824
AT2G36390		SBE2.1, BE3	BRANCHING ENZYME 3, starch bra...		Lus10023878 [exp]	19.3	0.6902
AT1G04120		ATABCC5, ABCC5,...	MULTIDRUG RESISTANCE PROTEIN 5...		Lus10022858 [exp]	19.6	0.7847
AT3G05030		ATNHX2, NHX2	sodium hydrogen exchanger 2 (....		Lus10040903 [exp]	21.5	0.7720
AT2G02910			Protein of unknown function (D...		Lus10037186 [exp]	21.8	0.7316
AT2G26270			unknown protein		Lus10038079 [exp]	27.0	0.6883

Compare expression of checked genes

Lus10020031 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.