Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22120 1129 / 0 ERD (early-responsive to dehydration stress) family protein AT4G04340 1110 / 0 ERD (early-responsive to dehydration stress) family protein (.1), ERD (early-responsive to dehydration stress) family protein (.2), ERD (early-responsive to dehydration stress) family protein (.3) AT1G11960 1070 / 0 ERD (early-responsive to dehydration stress) family protein (.1) AT3G21620 1031 / 0 ERD (early-responsive to dehydration stress) family protein (.1) AT1G62320 1018 / 0 ERD (early-responsive to dehydration stress) family protein (.1) AT4G15430 963 / 0 ERD (early-responsive to dehydration stress) family protein (.1), ERD (early-responsive to dehydration stress) family protein (.2) AT4G02900 951 / 0 ERD (early-responsive to dehydration stress) family protein (.1) AT1G32090 819 / 0 early-responsive to dehydration stress protein (ERD4) (.1) AT3G01100 380 / 5e-121 ATHYP1, HYP1 ARABIDOPSIS THALIANA HYPOTHETICAL PROTEIN 1, hypothetical protein 1 (.1.2) AT1G69450 331 / 2e-102 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015551 [exp] 1450 / 0 AT4G22120 1183 / 0.0 ERD (early-responsive to dehydration stress) family protein Lus10002996 [exp] 1117 / 0 AT4G22120 1087 / 0.0 ERD (early-responsive to dehydration stress) family protein Lus10024477 [exp] 1115 / 0 AT1G11960 1072 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Lus10035300 [exp] 1052 / 0 AT3G21620 1146 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Lus10030024 [exp] 1051 / 0 AT3G21620 1147 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Lus10000660 [exp] 969 / 0 AT4G02900 1113 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Lus10028000 [exp] 967 / 0 AT4G02900 1116 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Lus10002133 [exp] 866 / 0 AT1G32090 1136 / 0.0 early-responsive to dehydration stress protein (ERD4) (.1) Lus10005223 [exp] 368 / 4e-116 AT3G01100 895 / 0.0 ARABIDOPSIS THALIANA HYPOTHETICAL PROTEIN 1, hypothetical protein 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G009900 [exp] 1158 / 0 AT4G22120 1142 / 0.0 ERD (early-responsive to dehydration stress) family protein Potri.004G005900 [exp] 1135 / 0 AT4G22120 1151 / 0.0 ERD (early-responsive to dehydration stress) family protein Potri.004G006100 [exp] 1126 / 0 AT4G22120 1113 / 0.0 ERD (early-responsive to dehydration stress) family protein Potri.004G006000 [exp] 1108 / 0 AT4G22120 1139 / 0.0 ERD (early-responsive to dehydration stress) family protein Potri.014G156100 [exp] 1092 / 0 AT3G21620 1104 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Potri.002G226800 [exp] 1077 / 0 AT3G21620 1105 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Potri.003G099800 [exp] 846 / 0 AT1G32090 1094 / 0.0 early-responsive to dehydration stress protein (ERD4) (.1) Potri.001G133800 [exp] 834 / 0 AT1G32090 1061 / 0.0 early-responsive to dehydration stress protein (ERD4) (.1) Potri.004G115800 [exp] 404 / 6e-130 AT3G01100 866 / 0.0 ARABIDOPSIS THALIANA HYPOTHETICAL PROTEIN 1, hypothetical protein 1 (.1.2) Potri.010G164100 [exp] 386 / 2e-123 AT1G69450 844 / 0.0 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0416 [flax] [poplar] Anoctamin-like PF02714 [flax] [poplar] RSN1_7TM Calcium-dependent channel, 7TM region, putative phosphate
Representative CDS sequence Show only first row Show all	>Lus10020032 pacid=23156186 polypeptide=Lus10020032 locus=Lus10020032.g ID=Lus10020032.BGIv1.0 annot-version=v1.0 ATGGCTACGGTGGTAGATATCTCGGTTTCAGCTGGGATCAATCTCCTCACTGCCTTCATCTTCCTCTTGGCTTTTGCATTCTTGAGGCTCCAGCCTTTCA ATGACCGGGTCTACTTCCCTAAATGGTACCTCAAAGGCCTTCGCCATAGCCCGGCCACCGGCGGCGGCGCTGCTGTCTCTCGCGTCGTCAACTTGAACTT CTCCTCTTACCTCCGGTTCCTGAATTGGATTCCTGATGCTCTCAAGATGCCTGAGCCTGAGCTCATTGACCACGCCGGCCTTGACTCCGCCGTCTACCTC CGCATTTACCTCTTGGGGCTGAAGATCTTCGTCCCCATCACTGCTCTTGCCTGGGCTGTCCTCTTCCCGGTTAACTTGACTAACAAGACCCTAGAGAAGG CTGGTAATGTCACCTCCAGCGACATTGACAAGCTCTCCATCTCCAATATCCCTCTTGAATCTCAACGATTTTGGGCGCATATAGTGATGGCTTATGCATT TACCTTTTGGACCTTCTATATATTGATGAAGGAGTATGAGAAAGTTGCTTCCATGCGATTGCAATTCATGGCCTCCGAGAAACGACGCCCAGATCAATTC ACTGTCCTTGTTAGGAACGTGCCACCGGATCCTGATGAATCTGTGAGTGAGCTTGTGGAACACTTTTTCCTGGTCAATCATCCAGATAACTATCTCACAA ATCAGGTGGTATACAATGCAAACAAACTAGCTAGTTTAGTGAAGAAGAAGAAAAGCACGCGGAATAGGCTGGACTATTACCAACTTAAATATTCGAGGAA TCAAGCACACCGCCCTATGATTAAGACTGGTTTTCTGGGACTCCGGGGTGAAAAAGTGGATGCTATTGATTTCTACACCGCCAAGATGGAGAAGCTATCC ATGGAAATAGCGGAGGAGCGGGCAAGGGTAGCCAAGGATCCAAACTCTATCATGCCAGCGGCTTTCGTTTCGTTCAAAACTAGATGGGGTGCAGCTGTTT GCGCACAAACTCAGCAAGCAAGAAATCCTACTTTGTGGTTGACGGAGTGGGCGCCAGAGCCACGCGATGTATATTGGAAGAACCTTGCCATTCCTTATGT GTCACTCACAGTCAGGCGGCTTTTAGTCGGGGTTGCTTTCTTTTTCCTCACCTTTTTCTTTATGATCCCCATTGCAATGGTGCAATCTCTGGCAAGTATT GAAGGAATTGAGAAGGCAGCACCTTGGCTGGAGCCCATCATTGAAGCAGATTTTATAAAGTCCGTTGTTCAAGGCTTCCTACCTGGAATTGCCCTCAAGC TATTCTTGATTTTCCTACCAACGATATTGATGATCATGTCTAAATTCGAAGGCTTCACTTCCTTGTCCTCTCTGGAGAGGAGAGCGGCGACAAGGTTTTA TATATTTAACATTATCAATGTCTTTCTTGGAAGTATTATTGCTGGAACTGCATTTGAACAGCTGAATACCTTCATGAAGCAGTCCACTAGCGATATCCCA AAGATCATTGGTGTAGCGATTCCAATGAAAGCAACTTTCTTCATAACATATATAATGGTTGATGGCTGGGCTGGAATCGCTGGAGAAATTCTGATGTTGA AACCTTTGATAATTTACCACTTGAAGAACTTCTTTCTGGTGAAGACTGAAAAGGATAGGGAAGAAGCAATGGACCCCGGGAGTCTTGGATTCAATACAGG AGAGCCTCGTATACAGTTCTATTTCCTCCTGGGGCTTGTGTATGCACCAGTGACACCCATTCTCCTGCCGTTCATCTTAATTTTCTTTGCCTTCGCCTAC ATTGTGTTTCGCCACCAGATCATAAATGTGTACAATCAAGAGTACGAGAGTGCTGCAGCATTTTGGCCAGCGGTGCATGGGCGTGTTCTCATTGCACTTA TAATATCACAGTTGCTGATGATGGGGCTGTTGACTACAAAGAAAGCTGCCCTGGCGACTCCGTTTCTGATAGCACTGCCAGTGCTGACAATTTGGTTCTA CAAATTCTGCCAGGGCCGATATGAACCTGCGTTTGTCAGATATCCATTGCAGGCAACAAAGATGAAGGACACACTGGAGCATGCGAGGGAGCCCAACTTG AACCTGAAAGGATACCTGCAACAGGCGTACGTTCATCCAGTTTTCAAGGGCGGGGATGATGACGACGAGGAAGAAGAGGAGTACGGGGAGTTGGCTTATT CGAATGGGAAGATTGGTGATAGCGATACGGCCCTGGTTCCTACAAAGCGGCAATCAAGAAGGAACACGCCAGCTCCAAGCAGAGTAAGCGCCGGATCATC GCCAGGGGAGAGAAGTGTTGCCAAGGGAGGCCTTCCTCAACCATAA
AA sequence Show only first row Show all	>Lus10020032 pacid=23156186 polypeptide=Lus10020032 locus=Lus10020032.g ID=Lus10020032.BGIv1.0 annot-version=v1.0 MATVVDISVSAGINLLTAFIFLLAFAFLRLQPFNDRVYFPKWYLKGLRHSPATGGGAAVSRVVNLNFSSYLRFLNWIPDALKMPEPELIDHAGLDSAVYL RIYLLGLKIFVPITALAWAVLFPVNLTNKTLEKAGNVTSSDIDKLSISNIPLESQRFWAHIVMAYAFTFWTFYILMKEYEKVASMRLQFMASEKRRPDQF TVLVRNVPPDPDESVSELVEHFFLVNHPDNYLTNQVVYNANKLASLVKKKKSTRNRLDYYQLKYSRNQAHRPMIKTGFLGLRGEKVDAIDFYTAKMEKLS MEIAEERARVAKDPNSIMPAAFVSFKTRWGAAVCAQTQQARNPTLWLTEWAPEPRDVYWKNLAIPYVSLTVRRLLVGVAFFFLTFFFMIPIAMVQSLASI EGIEKAAPWLEPIIEADFIKSVVQGFLPGIALKLFLIFLPTILMIMSKFEGFTSLSSLERRAATRFYIFNIINVFLGSIIAGTAFEQLNTFMKQSTSDIP KIIGVAIPMKATFFITYIMVDGWAGIAGEILMLKPLIIYHLKNFFLVKTEKDREEAMDPGSLGFNTGEPRIQFYFLLGLVYAPVTPILLPFILIFFAFAY IVFRHQIINVYNQEYESAAAFWPAVHGRVLIALIISQLLMMGLLTTKKAALATPFLIALPVLTIWFYKFCQGRYEPAFVRYPLQATKMKDTLEHAREPNL NLKGYLQQAYVHPVFKGGDDDDEEEEEYGELAYSNGKIGDSDTALVPTKRQSRRNTPAPSRVSAGSSPGERSVAKGGLPQP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G22120			ERD (early-responsive to dehyd...		Lus10020032 [exp]	0	1
AT5G23140		NCLPP7, NCLPP2,...	nuclear-encoded CLP protease P...		Lus10013434 [exp]	10.1	0.8262
AT4G26860			Predicted pyridoxal phosphate-...		Lus10032558 [exp]	17.7	0.8146
AT3G26070			Plastid-lipid associated prote...		Lus10020982 [exp]	18.1	0.8235
AT1G04240	AUX_IAA	IAA3, SHY2	SHORT HYPOCOTYL 2, indole-3-ac...		Lus10014729 [exp]	20.7	0.7843
AT3G08510		ATPLC2	phospholipase C 2 (.1.2.3)		Lus10028287 [exp]	21.0	0.7906
AT5G23140		NCLPP7, NCLPP2,...	nuclear-encoded CLP protease P...		Lus10040981 [exp]	25.4	0.8202
AT4G14450		ATBET12	unknown protein		Lus10022200 [exp]	29.6	0.7660
AT5G66200		ARO2	armadillo repeat only 2 (.1)		Lus10041905 [exp]	32.9	0.7781
AT4G14450		ATBET12	unknown protein		Lus10021878 [exp]	33.3	0.8118
AT5G51010			Rubredoxin-like superfamily pr...		Lus10022430 [exp]	34.4	0.7561

Compare expression of checked genes

Lus10020032 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.