Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11950 818 / 0 Transcription factor jumonji (jmjC) domain-containing protein (.1) AT1G62310 806 / 0 transcription factor jumonji (jmjC) domain-containing protein (.1) AT4G00990 566 / 0 Transcription factor jumonji (jmjC) domain-containing protein (.1) AT3G07610 498 / 1e-160 IBM1 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) AT1G09060 394 / 1e-122 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) AT4G21430 289 / 7e-84 B160 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015260 [exp] 583 / 0 AT3G07610 627 / 0.0 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Lus10037812 [exp] 444 / 2e-141 AT1G09060 957 / 0.0 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) Lus10017092 [exp] 444 / 2e-141 AT1G09060 962 / 0.0 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) Lus10002391 [exp] 412 / 1e-127 AT3G07610 607 / 0.0 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Lus10027890 [exp] 410 / 6e-127 AT3G07610 578 / 0.0 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Lus10006741 [exp] 402 / 3e-126 AT4G21430 440 / 1e-141 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1) Lus10020084 [exp] 406 / 1e-125 AT4G21430 529 / 2e-172 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1) Lus10025380 [exp] 301 / 4e-89 AT3G07610 516 / 8e-170 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Lus10004602 [exp] 247 / 2e-73 AT3G07610 313 / 1e-97 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G006200 [exp] 928 / 0 AT1G11950 870 / 0.0 Transcription factor jumonji (jmjC) domain-containing protein (.1) Potri.011G009700 [exp] 905 / 0 AT1G11950 863 / 0.0 Transcription factor jumonji (jmjC) domain-containing protein (.1) Potri.005G082901 [exp] 623 / 0 AT3G07610 702 / 0.0 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Potri.005G091200 [exp] 618 / 0 AT3G07610 732 / 0.0 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Potri.004G032700 [exp] 483 / 5e-155 AT4G21430 522 / 1e-169 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1) Potri.013G019000 [exp] 442 / 2e-140 AT1G09060 996 / 0.0 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) Potri.011G041400 [exp] 439 / 1e-138 AT4G21430 465 / 2e-148 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1) Potri.015G012800 [exp] 426 / 7e-128 AT4G00990 508 / 4e-157 Transcription factor jumonji (jmjC) domain-containing protein (.1) Potri.005G027000 [exp] 375 / 2e-117 AT1G09060 759 / 0.0 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF02373 [flax] [poplar] JmjC JmjC domain, hydroxylase
Representative CDS sequence Show only first row Show all	>Lus10020033 pacid=23156117 polypeptide=Lus10020033 locus=Lus10020033.g ID=Lus10020033.BGIv1.0 annot-version=v1.0 ATGTCCGCAAAGGTTGCCAAGAACCGAGCTCCTCCACATCACCACCGGAGGCCTAGGCCAGCCAACAACCGAAATCGCATTGCTTTCGACGGCGACGATG ACTGGTTTCCGACGGCAGAGGCGATCACATCGAGGGGTAAGAGGAAGATGAGCCGGAAGAATCACAACAGTTTTAAGGCAATTGGCTCTTCTCCCTCCAT ATCATCGAATCCGATTCCTCCTAAGAGGCGCAGGTTTGCCGTGATCTCTGATTCCGATGACGATGATGATCCTTCTGCTGTTCCTCACTCTGGCGATTCA TCAGTAGCCAGATCGCTTCCTTCTTATTCCTCATCGTCATCAGAAAATTCTTCTTCTTCTTCTTCTTCTTCTTCTGCTGCTGCTGCTGCTCCAGTTACTC CTTCAACTTCTGCCTGCTCTGCCAGACTGTTAAAGCGAGTCAGAAGAGAAGGAGGAGGGGGCGGAGGTTGCTTTCCTGCTATTAACAGATGCCATCAGTG CTTGAAAGCTGAGAGGAAACTCTATGTTCGTTGTCTTAACTGTCGAACCAATCTCTATTGCCTCAGATGCATCAACCAATGGTACCCGGAGATGACAGAC CAAGACATTGCGCAGCAATGCCCTTTCTGTCGCAGAAATTGCAACTGCAATGCTTGTATACACTCTACTTCCTTGGTCAAGACCTCCAAGAGGGACCTCT CTCCAGCTGAAAAGATTCGGCATTTGCGTTATCTCATCAACTCGCTCTACCCTTCCCTACGGAAATTGTGTGACCAGCAAGCTCAGGAGATAAGCCTTGA TTCTAGCTTTTCTGATTCCCCTTATGAGATACCTGAGAACTCCTGTAACAATGATGAGCGGACTTACTACTACTACCAAAATTCTGACTTCTGTATTTTC CCCATCTTGGATGACAATTCAAACAGCAACTACTGTGCTACCTCTATTGTTGACCTCCATCGATGTTGCCCCAACTGCAACTTCGAACTTTGCTTAGCTT GTTGCCAAGAGATCCGCAGTGGCAGCATCTTGAAACGTGTTGAAATGAAGTTCCAGTATGTAGACCATGGTCCTAACTATATGCATGGTGGAGATACCTC AGTTTTGGCTTCTCAATTTCTGGAAGATCAGATCGAACATCTGACTGCACCTTCGTGGAACTCCTATGAGGATGGAAGCATCCCCTGCCCTCCAAAAGAG ATGGGCGGTTGTGGTGGCTGTGCATTGGAACTCAAGCGTATCTTTCCAGCAGGATGGATTTCTAATCTGTCGGAGAAAGCTAGCAAGTTTCTTTCGACCA GTGATACTATACCTCATAGTATGACTTGCAAATGTGTTGGAAAAGGAAGAGAAATAGTGAGGAAAGCCTCTTCTCGAGAACTATCAGATGACAATTACTT GTACTGCCCTGTTTCCAAGGACATTATAGAGGAGGAAGATCTCTTGCACTTTCAGAAACACTGGGAAAAAGGGGAACCAGTTGTTGTTCGTGATGTCCTG GATACAACCACTCAGTTAAGCTGGAAACCAATGGTGATGTTGCGTGCATTATGTGAGATCTCCAATTCTGATATAAGTTCTAAGATGTCCGAAGTGAAAG CCATTGATTGCCTAGCGGCTTGTGAGGTGGAGATCAACACCCGCATGTTTTTCAAAGGCTATACAGAGGGGAGGAGATATTCCAATCTTTGGCCTGAGAT GCTGAAGCTGAAGGACTGGCCCCCTTCTGCTAAGTTTGAAGATCTTTTGCCTCGTCACTGTGATGAATTTATCAGTGCACTTCCATTTCAAGAATACAGT GATCCAAAGTCTGGAATTTTAAACCTTGCAGTCAAGATTCCCCATGGTCTCCTGAAACCAGACATGGGTCCCAAAACTTATATTGCATATGGAATGAAGG AAGAGCTTGGCAGAGGGGACTCTGTGACCAAACTGCACTGTGATATGTCAGATGCGGTGAATATTTTGACTCATGTGGCTGAGGTAGCAGTAAATGAAGA ACAATGCCTTGCCATTGAGCATTTGAAAAAGTTACATAGCGAGCAGGATAGAAAAGAACATGTAGCAAACAATATGAGGAACGATCATAACAGCGTCGGA GATAAATGTGAAGAAGAGAGCAGGGAGCACAAACAGGGGGTGCAAGTTTCAAATGTTACCCAGTCAATGAAGGATTCTGCTGAGGTTGAAAGGGAAGTTG AGTTTTCGGTGAAGTCTGGATGCATGAATTTGCCAACAGAAGAGACAGAGGACACATGTGGTGCATTGTGGGACATTTTCAGGAGGGAAGATGTTCCTAA GTTAGAGGAATTTCTTAGAAAGCACTCCAGAGAGTTTAGGCATACATATTGTTGTCCAGTGAATCAGGTTTTTCATCCAATTCATGACCAATGCTTTTAC TTGACCTTGGAGCACAAGAAGAAACTAAAGGAGGAATTCGGAGTGGAGGCTTGGACATTCGAGCAGAAAGTTGGAGAAGCAGTGTTCATTCCAGCTGGAT GTCCACACCAAGTCAGGAATCTAAAGTCGTGCACAAAAGTTGCAGTTGATTTTGTTTCTCCTGAGAATGTTGGAGAATGCATCCGGTTAACTGAGGAGTT CCGGCAGCTTCCCAGGAACCACAGGGCCAGGGAAGACAAACTTGAGATAAAGAAGATGATCGTATATGCAATGAACGAAGCTATTCGGGATCTGGAAGAG TTGACAAACAAGGTCAAGGAAGACGGAGCATTTTCTATCGAAGATGTGTTGTAG
AA sequence Show only first row Show all	>Lus10020033 pacid=23156117 polypeptide=Lus10020033 locus=Lus10020033.g ID=Lus10020033.BGIv1.0 annot-version=v1.0 MSAKVAKNRAPPHHHRRPRPANNRNRIAFDGDDDWFPTAEAITSRGKRKMSRKNHNSFKAIGSSPSISSNPIPPKRRRFAVISDSDDDDDPSAVPHSGDS SVARSLPSYSSSSSENSSSSSSSSSAAAAAPVTPSTSACSARLLKRVRREGGGGGGCFPAINRCHQCLKAERKLYVRCLNCRTNLYCLRCINQWYPEMTD QDIAQQCPFCRRNCNCNACIHSTSLVKTSKRDLSPAEKIRHLRYLINSLYPSLRKLCDQQAQEISLDSSFSDSPYEIPENSCNNDERTYYYYQNSDFCIF PILDDNSNSNYCATSIVDLHRCCPNCNFELCLACCQEIRSGSILKRVEMKFQYVDHGPNYMHGGDTSVLASQFLEDQIEHLTAPSWNSYEDGSIPCPPKE MGGCGGCALELKRIFPAGWISNLSEKASKFLSTSDTIPHSMTCKCVGKGREIVRKASSRELSDDNYLYCPVSKDIIEEEDLLHFQKHWEKGEPVVVRDVL DTTTQLSWKPMVMLRALCEISNSDISSKMSEVKAIDCLAACEVEINTRMFFKGYTEGRRYSNLWPEMLKLKDWPPSAKFEDLLPRHCDEFISALPFQEYS DPKSGILNLAVKIPHGLLKPDMGPKTYIAYGMKEELGRGDSVTKLHCDMSDAVNILTHVAEVAVNEEQCLAIEHLKKLHSEQDRKEHVANNMRNDHNSVG DKCEEESREHKQGVQVSNVTQSMKDSAEVEREVEFSVKSGCMNLPTEETEDTCGALWDIFRREDVPKLEEFLRKHSREFRHTYCCPVNQVFHPIHDQCFY LTLEHKKKLKEEFGVEAWTFEQKVGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVGECIRLTEEFRQLPRNHRAREDKLEIKKMIVYAMNEAIRDLEE LTNKVKEDGAFSIEDVL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G62310			transcription factor jumonji (...		Lus10020033 [exp]	0	1
AT1G09250	bHLH	bHLH149, AIF4	basic helix-loop-helix (bHLH) ...		Lus10031425 [exp]	16.9	0.7312
AT1G77120		ADH1, ATADH, AT...	ARABIDOPSIS THALIANA ALCOHOL D...		Lus10042787 [exp]	27.3	0.7726
AT5G42740			Sugar isomerase (SIS) family p...		Lus10010808 [exp]	28.2	0.8179
AT2G30970		ASP1	aspartate aminotransferase 1 (...		Lus10025252 [exp]	32.6	0.7929
AT3G10040	Trihelix		sequence-specific DNA binding ...		Lus10008643 [exp]	32.8	0.8044
AT1G20270			2-oxoglutarate (2OG) and Fe(II...		Lus10017249 [exp]	38.0	0.7893
AT4G32060			calcium-binding EF hand family...		Lus10005346 [exp]	38.4	0.7940
AT3G10040	Trihelix		sequence-specific DNA binding ...		Lus10035582 [exp]	41.2	0.7637
AT5G07360			Amidase family protein (.1.2)		Lus10043019 [exp]	43.8	0.7400
AT4G32010	B3	HSL1, HSI2-L1, ...	VP1/ABI3-LIKE 2, HSI2-like 1 (...		Lus10025226 [exp]	56.2	0.7378

Compare expression of checked genes

Lus10020033 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.