Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04350 100 / 5e-25 EMB2369 EMBRYO DEFECTIVE 2369, tRNA synthetase class I (I, L, M and V) family protein (.1) AT5G49030 46 / 4e-06 OVA2 ovule abortion 2, tRNA synthetase class I (I, L, M and V) family protein (.1), tRNA synthetase class I (I, L, M and V) family protein (.2), tRNA synthetase class I (I, L, M and V) family protein (.3) AT4G10320 46 / 6e-06 tRNA synthetase class I (I, L, M and V) family protein (.1) AT2G37550 45 / 6e-06 ASP1, AGD7 yeast pde1 suppressor 1, ARF-GAP domain 7 (.1.2) AT3G53710 39 / 0.0008 AGD6 ARF-GAP domain 6 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015552 [exp] 106 / 5e-27 AT4G04350 1412 / 0.0 EMBRYO DEFECTIVE 2369, tRNA synthetase class I (I, L, M and V) family protein (.1) Lus10038317 [exp] 66 / 6e-14 AT2G37550 166 / 5e-50 yeast pde1 suppressor 1, ARF-GAP domain 7 (.1.2) Lus10023766 [exp] 49 / 7e-07 AT2G37550 485 / 4e-170 yeast pde1 suppressor 1, ARF-GAP domain 7 (.1.2) Lus10003978 [exp] 45 / 1e-05 AT2G37550 516 / 0.0 yeast pde1 suppressor 1, ARF-GAP domain 7 (.1.2) Lus10023765 [exp] 43 / 5e-05 AT2G37550 507 / 4e-178 yeast pde1 suppressor 1, ARF-GAP domain 7 (.1.2) Lus10024041 [exp] 42 / 0.0001 AT4G10320 1819 / 0.0 tRNA synthetase class I (I, L, M and V) family protein (.1) Lus10041706 [exp] 42 / 0.0001 AT4G10320 1820 / 0.0 tRNA synthetase class I (I, L, M and V) family protein (.1) Lus10033331 [exp] 40 / 0.0005 AT1G14610 1580 / 0.0 VALYL TRNA SYNTHETASE, TWIN 2, valyl-tRNA synthetase / valine--tRNA ligase (VALRS) (.1) Lus10016658 [exp] 40 / 0.0006 AT4G13780 1280 / 0.0 methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G009600 [exp] 102 / 2e-25 AT4G04350 1443 / 0.0 EMBRYO DEFECTIVE 2369, tRNA synthetase class I (I, L, M and V) family protein (.1) Potri.007G126501 [exp] 47 / 2e-06 AT4G10320 1167 / 0.0 tRNA synthetase class I (I, L, M and V) family protein (.1) Potri.017G033200 [exp] 47 / 3e-06 AT4G10320 1940 / 0.0 tRNA synthetase class I (I, L, M and V) family protein (.1) Potri.010G014500 [exp] 44 / 3e-05 AT5G49030 1612 / 0.0 ovule abortion 2, tRNA synthetase class I (I, L, M and V) family protein (.1), tRNA synthetase class I (I, L, M and V) family protein (.2), tRNA synthetase class I (I, L, M and V) family protein (.3) Potri.016G095100 [exp] 43 / 5e-05 AT3G53710 462 / 9e-161 ARF-GAP domain 6 (.1.2) Potri.006G084000 [exp] 40 / 0.0005 AT3G53710 498 / 8e-175 ARF-GAP domain 6 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [flax] [poplar] HUP PF00133 [flax] [poplar] tRNA-synt_1 tRNA synthetases class I (I, L, M and V)
Representative CDS sequence Show only first row Show all	>Lus10020034 pacid=23156214 polypeptide=Lus10020034 locus=Lus10020034.g ID=Lus10020034.BGIv1.0 annot-version=v1.0 ATGACGAAACAACTCAATACCACCACCAGTACAGTACCTCCTCATTTTTGCTTCCACTTGAGAAGTAATGATGGAGTTTGGATTGGCAACCCAAATCCCG ACCCTCTTCCTTCCTTCTCTTCCCTTTCCTCCTCCTCCTCCTCTCGCCGGAGGTCTCGACAGTCGTCTCTTGGGGCTGGTTTGCACGTTGGGCATCCACT TGGCTATACTGCCACTGATATTCTTGCTAGGTATAAGCGAATGCAGGGTTATAATGTTTTGCACCCTATGGGATGGGATGCCTTTGGTTTGCCCGCTGAG CAATACGCCATTGATGACCTCCATGCGGTTGGGAAGACAGAGGTGCTTGCAAGAGCAGCTGAAGCACATGAAGATGCCATAGGTGGCAGAGGCCCAATTA GGATTCTTGTTGGAGCAGTCGACGCCGATCTTGTTTGCAGGTTGCCCTTGGAGATCCCCGTAAGCGATGTTTCTGGCGACGTCGAGCGGGAGGATCATGC TATGGCTTTGCTTTGGCCATAG
AA sequence Show only first row Show all	>Lus10020034 pacid=23156214 polypeptide=Lus10020034 locus=Lus10020034.g ID=Lus10020034.BGIv1.0 annot-version=v1.0 MTKQLNTTTSTVPPHFCFHLRSNDGVWIGNPNPDPLPSFSSLSSSSSSRRRSRQSSLGAGLHVGHPLGYTATDILARYKRMQGYNVLHPMGWDAFGLPAE QYAIDDLHAVGKTEVLARAAEAHEDAIGGRGPIRILVGAVDADLVCRLPLEIPVSDVSGDVEREDHAMALLWP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G04350		EMB2369	EMBRYO DEFECTIVE 2369, tRNA sy...		Lus10020034 [exp]	0	1
AT5G34940		ATGUS3	glucuronidase 3 (.1.2.3)		Lus10001922 [exp]	5.3	0.8727
AT4G18830	OFP	ATOFP5, OFP5	ovate family protein 5 (.1)		Lus10015236 [exp]	7.1	0.8631
AT4G37640		ACA2	calcium ATPase 2 (.1)		Lus10002458 [exp]	10.4	0.8078
AT2G37640		ATHEXPALPHA1.9,...	ARABIDOPSIS THALIANA EXPANSIN ...		Lus10002638 [exp]	10.7	0.8645
					Lus10023010 [exp]	15.9	0.8547
AT3G19000			2-oxoglutarate (2OG) and Fe(II...		Lus10023850 [exp]	18.2	0.8645
AT5G02390		DAU1	DUO1-activated unknown 1, Prot...		Lus10016715 [exp]	19.8	0.8457
AT1G77410		BGAL16	beta-galactosidase 16 (.1)		Lus10018138 [exp]	22.7	0.8627
AT5G43290	WRKY	ATWRKY49, WRKY4...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10010851 [exp]	25.1	0.8513
					Lus10032858 [exp]	25.5	0.8441

Compare expression of checked genes

Lus10020034 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.