Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11790 397 / 3e-137 AtADT1, ADT1 Arabidopsis thaliana arogenate dehydratase 1, arogenate dehydratase 1 (.1.2) AT3G07630 353 / 2e-120 AtADT2, ADT2 Arabidopsis thaliana arogenate dehydratase 2, arogenate dehydratase 2 (.1.2) AT1G08250 350 / 6e-119 AtADT6, ADT6 Arabidopsis thaliana arogenate dehydratase 6, arogenate dehydratase 6 (.1) AT2G27820 344 / 3e-116 ADT3, PD1 arogenate dehydratase 3, prephenate dehydratase 1 (.1) AT5G22630 318 / 7e-106 ADT5 arogenate dehydratase 5 (.1) AT3G44720 311 / 2e-103 ADT4 arogenate dehydratase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015561 [exp] 680 / 0 AT1G11790 437 / 3e-153 Arabidopsis thaliana arogenate dehydratase 1, arogenate dehydratase 1 (.1.2) Lus10031547 [exp] 363 / 2e-124 AT1G11790 437 / 3e-153 Arabidopsis thaliana arogenate dehydratase 1, arogenate dehydratase 1 (.1.2) Lus10015130 [exp] 362 / 5e-124 AT1G11790 434 / 4e-152 Arabidopsis thaliana arogenate dehydratase 1, arogenate dehydratase 1 (.1.2) Lus10020549 [exp] 338 / 1e-113 AT1G08250 602 / 0.0 Arabidopsis thaliana arogenate dehydratase 6, arogenate dehydratase 6 (.1) Lus10009396 [exp] 337 / 2e-113 AT1G08250 607 / 0.0 Arabidopsis thaliana arogenate dehydratase 6, arogenate dehydratase 6 (.1) Lus10018128 [exp] 336 / 6e-113 AT3G07630 456 / 5e-160 Arabidopsis thaliana arogenate dehydratase 2, arogenate dehydratase 2 (.1.2) Lus10036135 [exp] 332 / 4e-112 AT3G07630 449 / 7e-158 Arabidopsis thaliana arogenate dehydratase 2, arogenate dehydratase 2 (.1.2) Lus10043369 [exp] 332 / 2e-111 AT1G08250 599 / 0.0 Arabidopsis thaliana arogenate dehydratase 6, arogenate dehydratase 6 (.1) Lus10019526 [exp] 332 / 2e-111 AT1G08250 602 / 0.0 Arabidopsis thaliana arogenate dehydratase 6, arogenate dehydratase 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G004700 [exp] 462 / 7e-163 AT1G11790 527 / 0.0 Arabidopsis thaliana arogenate dehydratase 1, arogenate dehydratase 1 (.1.2) Potri.004G013400 [exp] 453 / 2e-159 AT1G11790 513 / 0.0 Arabidopsis thaliana arogenate dehydratase 1, arogenate dehydratase 1 (.1.2) Potri.008G195500 [exp] 360 / 6e-123 AT3G07630 504 / 2e-179 Arabidopsis thaliana arogenate dehydratase 2, arogenate dehydratase 2 (.1.2) Potri.004G188100 [exp] 341 / 1e-114 AT1G08250 612 / 0.0 Arabidopsis thaliana arogenate dehydratase 6, arogenate dehydratase 6 (.1) Potri.009G148800 [exp] 340 / 2e-114 AT1G08250 606 / 0.0 Arabidopsis thaliana arogenate dehydratase 6, arogenate dehydratase 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0177 [flax] [poplar] PBP PF00800 [flax] [poplar] PDT Prephenate dehydratase
Representative CDS sequence Show only first row Show all	>Lus10020035 pacid=23156183 polypeptide=Lus10020035 locus=Lus10020035.g ID=Lus10020035.BGIv1.0 annot-version=v1.0 ATGGCATTGGGAGCCGTGGAGTCCATCTGGGTCGGCGGCCTATTCAACTCTCATTCCAATCCTCTGTTCTCTGATTCTTCTGGGCCTTCCAGACTTGTTG CTGTGGATTTCAGGTGCCGGAAATGGCAATGCTGTTGGTCCTCAGTTGTTCTTGCTCACACTACCCTCACTCCTGTCGATGACGACAAGAAGCCCCTCGC TCCTCAACCTAATCCTCCTACCCCTACTGCTGATTCCAAGGACATTATTGTCTCCAAGGGATTTCACAGAGACCTCAATTTTCTTCCCAAACCGTTGAGT GCTACGGACGCTTCAAACTCTACTGATGGTGGTCCAAAAGTGAGGGTTGCATATCAGGGGATTGCAGGTGCATATAGTGAGGCTGCTGCACTAAAGGCTT ACCCTGGTAGTGAAACAGTACCATGTTACGAGTTTGAAGCTGCGTTCAAGGCAGTAGAACTCTGGCTAGTGGACAAAGCAGTCCTCCCCATTGAGAATTC AGTTGGTGGAAGCATCCATCGTAACTATGACTTGCTCCTTCGTCATAGGCTTCATATTGTAGGAGAGGTACAGATGGAAGTTAATCACTGCCTTTTGACA CTGCCTGGCGTGAAAAAGGAGGAACTCAAACGTGTACTAAGCCACCCTCAAGCACTTGCTCAGTGTGAGACAATATTGAGCAGTTTGAATATTATTAGAG TCAATTCTGAGGATACTGCCGGTGCTGCTCAGGATGACGTCGACAACATTACTCGCTTCCTTATACTTGCCCGAGAGCCTATCATTCCAGGGACTGACAA GCCATATAGGACGAGCATTGCTTTCACCCTTGAAGGAGGTCCGGGTGTGCTGTTCAAAGCACTGGCAGTGTTTGCTTTGAGGGACATCAGTTTAACAAAG ATAGAGAGCCGGCCACAAAGAAGGCGTCCGGTGAGAGTTGTGGATGATTCTAACAAGGGCAGTGCCAAGTACTTTGACTACCTGTTTTACATAGACTTTG CAGCATCAATGGCGGAGCACAGGGCACAGCATGCACTGGGACACTTACAGGCAAGTGCGCAGGAGTTTGCTAAGTTCATACGTGTTCTTGGTAGCTATCC AATGGATACCATCAGTTAA
AA sequence Show only first row Show all	>Lus10020035 pacid=23156183 polypeptide=Lus10020035 locus=Lus10020035.g ID=Lus10020035.BGIv1.0 annot-version=v1.0 MALGAVESIWVGGLFNSHSNPLFSDSSGPSRLVAVDFRCRKWQCCWSSVVLAHTTLTPVDDDKKPLAPQPNPPTPTADSKDIIVSKGFHRDLNFLPKPLS ATDASNSTDGGPKVRVAYQGIAGAYSEAAALKAYPGSETVPCYEFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQMEVNHCLLT LPGVKKEELKRVLSHPQALAQCETILSSLNIIRVNSEDTAGAAQDDVDNITRFLILAREPIIPGTDKPYRTSIAFTLEGGPGVLFKALAVFALRDISLTK IESRPQRRRPVRVVDDSNKGSAKYFDYLFYIDFAASMAEHRAQHALGHLQASAQEFAKFIRVLGSYPMDTIS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11790		AtADT1, ADT1	Arabidopsis thaliana arogenate...		Lus10020035 [exp]	0	1
AT3G10690		GYRA	DNA GYRASE A (.1)		Lus10008940 [exp]	6.1	0.9082
AT5G43960			Nuclear transport factor 2 (NT...		Lus10023722 [exp]	9.7	0.8965
AT5G23310		FSD3	Fe superoxide dismutase 3 (.1)		Lus10017378 [exp]	11.1	0.8935
AT5G04130		GYRB2	DNA GYRASE B2 (.1.2)		Lus10010428 [exp]	14.8	0.8935
AT5G20950			Glycosyl hydrolase family prot...		Lus10010657 [exp]	15.5	0.8495
AT4G35160			O-methyltransferase family pro...		Lus10025098 [exp]	17.3	0.8739
AT3G10140		RECA3	RECA homolog 3 (.1)		Lus10018037 [exp]	17.9	0.8788
AT2G05990		ENR1, MOD1	MOSAIC DEATH 1, ENOYL-ACP REDU...		Lus10016274 [exp]	19.0	0.8928
AT4G19420			Pectinacetylesterase family pr...		Lus10034766 [exp]	20.7	0.8596
AT5G59190			subtilase family protein (.1)		Lus10009867 [exp]	22.0	0.8787

Compare expression of checked genes

Lus10020035 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.