Plant FIBer expression Database

Lus10020036 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G62045 47 / 2e-07 unknown protein
AT1G11740 47 / 2e-06 ankyrin repeat family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G013601
[exp]
50 / 2e-08 AT1G62045 52 / 1e-10 unknown protein
Potri.011G004400
[exp]
46 / 5e-07 AT1G62045 47 / 2e-08 unknown protein
PFAM info
Representative CDS sequence
>Lus10020036 pacid=23156118 polypeptide=Lus10020036 locus=Lus10020036.g ID=Lus10020036.BGIv1.0 annot-version=v1.0
ATGAACAGCGAAGCACCAAGCTGGGCGGATCAATGGGGAACTGGCGGAATCGGCGCCATGGACGACCACGACAAGACCAACCACGATGAGACCGCGGCCA
AGCCGGAGTCCAAGAATGGAGGTGGTGGTCTCTTCAGTAAGATCAAGGGCATCAAATGGTTCAAACCCAAATCCAGTAAGAAGAGCAGCTCCACTTCAGC
TACCTCTGCTCAAATTCTGGTTGCAGACGGTACCAACAATGTAAGATCCAATCACTCCTTGGCACCTTACATGTATGTTTATGACAAGAAATCCTACCTC
GATGACCAATTCAAAAGGCCAAATCGTGTATTGATCACAAAGCCATATCGAATCGACTCGCTTGGTGGAACTCTCGTTAATCATACAAATATGGCAAGAA
CGACCTTACAAAGAATTCACCCATCTAGGAAGAACAGAGCCGGAACGCACCGAACAGATGACACCACTGTTGATGGCAGTGGTGAGTTCTTGGCAATTAG
AGAGGATGGCGTAGATCGAGGTTTCGAGGATGGGACAGCCGACGAGCAGTAG
AA sequence
>Lus10020036 pacid=23156118 polypeptide=Lus10020036 locus=Lus10020036.g ID=Lus10020036.BGIv1.0 annot-version=v1.0
MNSEAPSWADQWGTGGIGAMDDHDKTNHDETAAKPESKNGGGGLFSKIKGIKWFKPKSSKKSSSTSATSAQILVADGTNNVRSNHSLAPYMYVYDKKSYL
DDQFKRPNRVLITKPYRIDSLGGTLVNHTNMARTTLQRIHPSRKNRAGTHRTDDTTVDGSGEFLAIREDGVDRGFEDGTADEQ

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G11740 ankyrin repeat family protein ... Lus10020036
[exp]
0 1
AT3G55830 EPC1 ECTOPICALLY PARTING CELLS, Nuc... Lus10028274
[exp]
3.7 0.8972
AT5G57620 MYB ATMYB36 myb domain protein 36 (.1) Lus10006978
[exp]
3.9 0.9254
AT3G46060 ARA3, Ara-3, At... RAB GTPase homolog 8A (.1.2.3) Lus10024423
[exp]
5.3 0.9076
AT3G24020 Disease resistance-responsive ... Lus10023689
[exp]
7.3 0.9137
AT1G11940 Core-2/I-branching beta-1,6-N-... Lus10020037
[exp]
7.6 0.8632
AT3G49870 ATARLA1C ADP-ribosylation factor-like A... Lus10019259
[exp]
8.1 0.9011
AT4G32140 EamA-like transporter family (... Lus10006194
[exp]
8.5 0.9125
AT1G32310 unknown protein Lus10030955
[exp]
10.4 0.9077
AT1G20575 DPMS1 dolichol phosphate mannose syn... Lus10030748
[exp]
12.4 0.8902
AT5G65430 14-3-3KAPPA, GF... 14-3-3 PROTEIN G-BOX FACTOR14 ... Lus10025727
[exp]
16.2 0.8529

Lus10020036 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.