Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11940 393 / 7e-136 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G62305 392 / 1e-135 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT5G14550 335 / 4e-113 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT4G31350 156 / 6e-44 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT1G10280 155 / 4e-43 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT2G19160 152 / 2e-42 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G57270 150 / 1e-41 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2.3) AT5G16170 147 / 5e-40 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G68390 145 / 2e-39 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT4G30060 144 / 5e-39 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015553 [exp] 643 / 0 AT1G11940 437 / 9e-153 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10035297 [exp] 338 / 9e-114 AT1G11940 371 / 4e-127 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10030027 [exp] 336 / 4e-113 AT1G11940 369 / 1e-126 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10008770 [exp] 333 / 3e-112 AT5G14550 558 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Lus10022242 [exp] 332 / 4e-112 AT5G14550 554 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Lus10026959 [exp] 160 / 5e-45 AT4G31350 490 / 8e-174 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Lus10025464 [exp] 154 / 7e-43 AT2G19160 550 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10024468 [exp] 152 / 3e-42 AT1G10280 524 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10002989 [exp] 152 / 4e-42 AT1G10280 525 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G009500 [exp] 483 / 4e-171 AT1G62305 428 / 7e-150 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Potri.002G227000 [exp] 347 / 2e-117 AT1G11940 369 / 7e-126 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.001G348400 [exp] 335 / 3e-113 AT5G14550 509 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Potri.015G045400 [exp] 155 / 2e-43 AT1G68390 390 / 2e-134 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.004G228100 [exp] 155 / 2e-43 AT1G10280 512 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.010G121800 [exp] 152 / 4e-42 AT1G68390 399 / 1e-137 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.003G001700 [exp] 152 / 5e-42 AT1G10280 543 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.006G233400 [exp] 150 / 1e-41 AT5G11730 557 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.006G076600 [exp] 150 / 1e-41 AT2G19160 560 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.018G059100 [exp] 149 / 4e-41 AT5G11730 548 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF02485 [flax] [poplar] Branch Core-2/I-Branching enzyme
Representative CDS sequence Show only first row Show all	>Lus10020037 pacid=23156207 polypeptide=Lus10020037 locus=Lus10020037.g ID=Lus10020037.BGIv1.0 annot-version=v1.0 ATGAGCAGGAAAACCCCTCCACAATTACTAGCACTAGTTTCCCCTCCTCACCGACGCTGGAAGCTCTCCATCCTATTCTTCATCTCCCTCCTCGCCATCC TCAACCTTCACTTGTACTACTCCTCCTTCTCCGCCGTCGTCGACACATCTTCCAGTATCTCCCGCTCCAGGCTACCCCTCACCTTCGATGGACCTCCCAA GATCGCTTTCCTTTTCCTCGTCCGCCACGATCTCCCTCTCGATTTCGTCTGGGCTGCCTTCTTCGACGCTGCTGGCGTGCCTTCTAACTTCTCCATCTTC CTACATTCCTCCGTCCCTGGATTTCAGCTGAATGAATCCACCACCAGATCCCCTCACTTTTATGGCCGCCACTTGAATACTTCTATTCAGGTGAAATGGG GAGAATCAAGTATGTTACAAGCCGAGAAGTTGCTCCTTGCTGCTGCCTTGGACGATCCTGCTAATCAGCGTTTCATTCTTCTTTCTGACAGTTGTGTCCC TTTGTACAACTTTACTTACATTTACAACTACCTGATGGCTTCTCCTAGGAGTTTCGTGGACAGTTTTCTTGATATGAAGGAAGGCCGCTACAACCCAAAG ATGTCACCTGTTATACCAATGCATAAATGGCGGAAAGGATCCCAGTGGATAACCTTAATCCGGAGCCATGCAGAAGTTGTCGTAGATGATGATGCTATAT TGGCAGTTTTCAAGAAGTTTTGCAAGCGACGCCCGCCAGTTGATGCTAGTTACGGAAAGCTTAATGTGATTCTTCAGAAGCAACACAATTGTATTCCAGA CGAGCACTATGTTCAAACACTGCTTGCGATGAGCGGGGTGGAAGATGAGCTTGAAAGAAGAACGGTGACTTACACAGAGTGGCATCAGTCGGCAAATACG ATGGAGAACACGGGTTGGCATCCAACAACATTCACGTATGCGAACGCCGGCCCACACACGATTAAAACGATCAAGGATATAGATCATGTGTATTACGAGA CGGAGTATCGAACGGAATGGTGCCGCAGTAACTCAACATCCGTCCCTTGCTTTTTGTTCGGGAGGAAGTTCTCGAGAGGAGCTGCCATGCGGGTATTGAG CGATGGTTTGGTGGGTCGTTTTGATGCCTCTATGCTATTATCAACCACACCATTACCACCTACGTGA
AA sequence Show only first row Show all	>Lus10020037 pacid=23156207 polypeptide=Lus10020037 locus=Lus10020037.g ID=Lus10020037.BGIv1.0 annot-version=v1.0 MSRKTPPQLLALVSPPHRRWKLSILFFISLLAILNLHLYYSSFSAVVDTSSSISRSRLPLTFDGPPKIAFLFLVRHDLPLDFVWAAFFDAAGVPSNFSIF LHSSVPGFQLNESTTRSPHFYGRHLNTSIQVKWGESSMLQAEKLLLAAALDDPANQRFILLSDSCVPLYNFTYIYNYLMASPRSFVDSFLDMKEGRYNPK MSPVIPMHKWRKGSQWITLIRSHAEVVVDDDAILAVFKKFCKRRPPVDASYGKLNVILQKQHNCIPDEHYVQTLLAMSGVEDELERRTVTYTEWHQSANT MENTGWHPTTFTYANAGPHTIKTIKDIDHVYYETEYRTEWCRSNSTSVPCFLFGRKFSRGAAMRVLSDGLVGRFDASMLLSTTPLPPT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11940			Core-2/I-branching beta-1,6-N-...		Lus10020037 [exp]	0	1
AT5G55180			O-Glycosyl hydrolases family 1...		Lus10013016 [exp]	3.5	0.8531
AT1G16890		UBC36 ,UBC13B	UBIQUITIN CONJUGATING ENZYME 1...		Lus10000353 [exp]	4.9	0.8577
AT3G53570		AME2, AFC1	FUS3-complementing gene 1 (.1....		Lus10024431 [exp]	6.0	0.8547
AT1G11740			ankyrin repeat family protein ...		Lus10020036 [exp]	7.6	0.8632
AT3G55830		EPC1	ECTOPICALLY PARTING CELLS, Nuc...		Lus10028274 [exp]	10.4	0.8359
AT1G79910			Regulator of Vps4 activity in ...		Lus10011455 [exp]	11.0	0.8472
AT4G19110			Protein kinase superfamily pro...		Lus10033278 [exp]	14.4	0.8423
AT1G16760			Protein kinase protein with ad...		Lus10008609 [exp]	15.3	0.8037
AT4G36380		ROT3	ROTUNDIFOLIA 3, Cytochrome P45...		Lus10041794 [exp]	17.9	0.8428
AT3G02740			Eukaryotic aspartyl protease f...		Lus10036430 [exp]	20.5	0.8178

Compare expression of checked genes

Lus10020037 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.