Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32580 132 / 2e-39 Protein of unknown function (DUF1068) (.1), Protein of unknown function (DUF1068) (.2) AT1G05070 130 / 1e-38 Protein of unknown function (DUF1068) (.1) AT4G04360 127 / 2e-37 Protein of unknown function (DUF1068) (.1) AT4G30996 105 / 3e-29 NKS1 NA\(+\)- AND K\(+\)-SENSITIVE 1, Protein of unknown function (DUF1068) (.1) AT2G24290 101 / 2e-27 Protein of unknown function (DUF1068) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015556 [exp] 246 / 1e-84 AT1G05070 179 / 4e-58 Protein of unknown function (DUF1068) (.1) Lus10035288 [exp] 144 / 7e-44 AT1G05070 252 / 1e-86 Protein of unknown function (DUF1068) (.1) Lus10030034 [exp] 142 / 3e-43 AT1G05070 250 / 1e-85 Protein of unknown function (DUF1068) (.1) Lus10019053 [exp] 98 / 4e-26 AT2G24290 259 / 1e-89 Protein of unknown function (DUF1068) (.1) Lus10036299 [exp] 96 / 5e-25 AT2G24290 257 / 1e-88 Protein of unknown function (DUF1068) (.1) Lus10029975 [exp] 55 / 1e-09 AT2G32580 109 / 3e-30 Protein of unknown function (DUF1068) (.1), Protein of unknown function (DUF1068) (.2) Lus10035349 [exp] 52 / 1e-08 AT2G32580 110 / 2e-30 Protein of unknown function (DUF1068) (.1), Protein of unknown function (DUF1068) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G006500 [exp] 153 / 1e-47 AT2G32580 206 / 6e-68 Protein of unknown function (DUF1068) (.1), Protein of unknown function (DUF1068) (.2) Potri.002G227100 [exp] 145 / 1e-44 AT2G32580 218 / 6e-73 Protein of unknown function (DUF1068) (.1), Protein of unknown function (DUF1068) (.2) Potri.014G155600 [exp] 145 / 1e-44 AT2G32580 245 / 1e-83 Protein of unknown function (DUF1068) (.1), Protein of unknown function (DUF1068) (.2) Potri.018G111100 [exp] 101 / 1e-27 AT4G30996 208 / 2e-69 NA\(+\)- AND K\(+\)-SENSITIVE 1, Protein of unknown function (DUF1068) (.1) Potri.006G187800 [exp] 101 / 2e-27 AT4G30996 198 / 1e-65 NA\(+\)- AND K\(+\)-SENSITIVE 1, Protein of unknown function (DUF1068) (.1) Potri.013G026900 [exp] 84 / 1e-20 AT2G24290 114 / 2e-32 Protein of unknown function (DUF1068) (.1) Potri.005G038000 [exp] 77 / 4e-18 AT1G05070 110 / 7e-31 Protein of unknown function (DUF1068) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06364 [flax] [poplar] DUF1068 Protein of unknown function (DUF1068)
Representative CDS sequence Show only first row Show all	>Lus10020038 pacid=23156234 polypeptide=Lus10020038 locus=Lus10020038.g ID=Lus10020038.BGIv1.0 annot-version=v1.0 ATGAACAACAGAGCACCGGAAAGAACAGTGAAGAGAGTGATGGCTCTCTTGGGGTTGGGCCTCGCCGCTTACATCATAGTCCCCCGAATTTACTGGCACA TCTCCGATTTCATAACCCCCGCCACCGTCCCCGATTGCCCGTCTTGTTTCTGCGACTGCTCTTCCCAGCCCCTCCTTTCCCTTTCAGACGAATGCATGAA AAGGGACCCGGACATGAGCGAGAAGATGGAGAAGAGTTTCACAGGGCTACTGACGGAGGAAGTCAAGCGGAAAGAGGCGGAAGCTGTGAGGAACCAGCAA CGAGCTGATGTTGCGCTGTTGGAAGCCAAGAAGATGGCATCGCAATTCCAGAAGGAAGCCGACAAGTGCAGCGCCGGAATGGACACTTGCGAGGTTGCCA GGGAGAAAGCCGACGAAGCTCTCATCTCTCAGAGGCACATCAGCTCCATTTGGGAGATCAGGGCCCGTCAGAGAGGATGGCGACCCTCCACAGCCATTGG CGACCTCCACTACATCCACTAG
AA sequence Show only first row Show all	>Lus10020038 pacid=23156234 polypeptide=Lus10020038 locus=Lus10020038.g ID=Lus10020038.BGIv1.0 annot-version=v1.0 MNNRAPERTVKRVMALLGLGLAAYIIVPRIYWHISDFITPATVPDCPSCFCDCSSQPLLSLSDECMKRDPDMSEKMEKSFTGLLTEEVKRKEAEAVRNQQ RADVALLEAKKMASQFQKEADKCSAGMDTCEVAREKADEALISQRHISSIWEIRARQRGWRPSTAIGDLHYIH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05070			Protein of unknown function (D...		Lus10020038 [exp]	0	1
AT5G51410			LUC7 N_terminus domain-contain...		Lus10027212 [exp]	2.2	0.8159
AT5G28840		GME	"GDP-D-mannose 3',5'-epimerase...		Lus10001777 [exp]	5.5	0.8350
AT2G24580			FAD-dependent oxidoreductase f...		Lus10026231 [exp]	5.7	0.8260
AT3G09970			Calcineurin-like metallo-phosp...		Lus10014383 [exp]	5.9	0.8383
AT5G05830			RING/FYVE/PHD zinc finger supe...		Lus10028249 [exp]	8.8	0.8099
AT1G30910			Molybdenum cofactor sulfurase ...		Lus10007754 [exp]	12.7	0.8095
AT1G55805			BolA-like family protein (.1)		Lus10002318 [exp]	13.1	0.8064
AT5G50740			Heavy metal transport/detoxifi...		Lus10038785 [exp]	13.3	0.8073
AT4G03600			unknown protein		Lus10039834 [exp]	13.3	0.8244
AT3G44900		ATCHX4	cation/H+ exchanger 4, cation/...		Lus10043128 [exp]	13.4	0.7715

Compare expression of checked genes

Lus10020038 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.