Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11930 360 / 7e-126 Predicted pyridoxal phosphate-dependent enzyme, YBL036C type (.1.2) AT4G26860 328 / 1e-113 Predicted pyridoxal phosphate-dependent enzyme, YBL036C type (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015557 [exp] 429 / 1e-153 AT1G11930 361 / 6e-128 Predicted pyridoxal phosphate-dependent enzyme, YBL036C type (.1.2) Lus10032558 [exp] 309 / 8e-106 AT4G26860 387 / 8e-138 Predicted pyridoxal phosphate-dependent enzyme, YBL036C type (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G006600 [exp] 374 / 3e-131 AT1G11930 417 / 5e-149 Predicted pyridoxal phosphate-dependent enzyme, YBL036C type (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF01168 [flax] [poplar] Ala_racemase_N Alanine racemase, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10020039 pacid=23156196 polypeptide=Lus10020039 locus=Lus10020039.g ID=Lus10020039.BGIv1.0 annot-version=v1.0 ATGAATAATATCATATACATGTCCTTTCTGGATTTGGAGAGAGGTTCGGATTTGAAGAGGTGGTGGACGGAGGACGACGGCAGTGCTTCTACAAAACGAT CACTTTCAGTTCCAGAAGTGAAGAACCAGGAGAAACCCGATACACGTCACACTTGTACACCATCCCCACCACACAACATTTACATCCCAAGATATGGAAG CAACAGCCTCAGCTGCGGTGGGCGGAGGGGGAGGGGCCGCCGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTGTCGCGTGGCGCCGCG GAAGGGTCAGGTCGTGGATCCCACCAGGTCCGATTGGTGGCTGTTAGCAAGACGAAGCCAGTCTCTGTCCTTCGACAGGTCTACGACGCTGGTCATCGTT GTTTCGGCGAAAACTATGCCCAGGAACTCATAGATAAAGCTCCTCAGCTTCCGGCAGACGTGGAGTGGCACTTCATTGGCAACTTACAGAGCAACAAAGT AAAGCCTCTACTGGCTGGTGTACCCAACCTTGCCATTGTTGAAAGCGTAGATGATGACAAGATTGCGAGTCGTCTTGATCGTGTGGTTGAAAGCTTGGGA AGGAAACCGTTGAAGGTCTTTATCCAAGTGAATACCAGTGGCGAAGAATCTAAATATGGTGTTGAGCCATCAAGCTGCGTAGAACTTGCAAAGCATGTCA GTGAGAGCTGCTCAAATCTCGAGTTTTGCGGTCTGATGACAATAGGAATGCTTGACTTTTCATCCACTCCTGAAAACTTTAAGACATTAGCAAGCTGCAG AAGTGAAGTTTGCAAAGCTCTAGGTATAGAAGAAGAGCAGTGTGAGCTGTCAATGGGAATGTCCAACGACTTCGAGCAAGCGATTGAAATGGGGAGTACG AATGTGAGAGTTGGGTCCATCATATTCGGGGCCAGGGAATATGCGAAGAAATAA
AA sequence Show only first row Show all	>Lus10020039 pacid=23156196 polypeptide=Lus10020039 locus=Lus10020039.g ID=Lus10020039.BGIv1.0 annot-version=v1.0 MNNIIYMSFLDLERGSDLKRWWTEDDGSASTKRSLSVPEVKNQEKPDTRHTCTPSPPHNIYIPRYGSNSLSCGGRRGRGRRXXXXXXXXXXXXXVSRGAA EGSGRGSHQVRLVAVSKTKPVSVLRQVYDAGHRCFGENYAQELIDKAPQLPADVEWHFIGNLQSNKVKPLLAGVPNLAIVESVDDDKIASRLDRVVESLG RKPLKVFIQVNTSGEESKYGVEPSSCVELAKHVSESCSNLEFCGLMTIGMLDFSSTPENFKTLASCRSEVCKALGIEEEQCELSMGMSNDFEQAIEMGST NVRVGSIIFGAREYAKK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11930			Predicted pyridoxal phosphate-...		Lus10020039 [exp]	0	1
AT1G11930			Predicted pyridoxal phosphate-...		Lus10015557 [exp]	2.4	0.8098
AT1G78380		GST8, ATGSTU19	GLUTATHIONE TRANSFERASE 8, A. ...		Lus10042470 [exp]	2.8	0.8550
AT3G59280		TXR1	THAXTOMIN A RESISTANT 1, Prote...		Lus10043207 [exp]	3.7	0.8433
AT1G55805			BolA-like family protein (.1)		Lus10002318 [exp]	6.0	0.8158
AT3G13845			unknown protein		Lus10015617 [exp]	7.5	0.7987
AT1G78380		GST8, ATGSTU19	GLUTATHIONE TRANSFERASE 8, A. ...		Lus10026198 [exp]	10.4	0.8402
AT1G76890	Trihelix	AT-GT2, GT2	Duplicated homeodomain-like su...		Lus10020873 [exp]	14.4	0.7983
AT3G15360		ATHM4, ATM4, TR...	ARABIDOPSIS THIOREDOXIN M-TYPE...		Lus10014798 [exp]	15.6	0.7668
AT1G80760		NLM7, NIP6;1	NOD26-like intrinsic protein 6...		Lus10024066 [exp]	18.7	0.7577
AT4G10020		ATHSD5	hydroxysteroid dehydrogenase 5...		Lus10009467 [exp]	19.3	0.7836

Compare expression of checked genes

Lus10020039 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.