Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04610 672 / 0 1-Apr, PRH19, ATAPR1, APR1 PAPS REDUCTASE HOMOLOG 19, APS reductase 1 (.1) AT4G21990 671 / 0 3-Apr, PRH-26, PRH26, ATAPR3, APR3 PAPS REDUCTASE HOMOLOG 26, APS reductase 3 (.1.2) AT1G62180 659 / 0 2-Apr, ATAPR2, APSR, PRH43, APR2 3'-PHOSPHOADENOSINE-5'-PHOSPHOSULFATE \(PAPS\) REDUCTASE HOMOLOG 43, ADENOSINE-5'-PHOSPHOSULFATE REDUCTASE, 5'adenylylphosphosulfate reductase 2 (.1.2) AT5G60640 57 / 2e-08 ATPDI2, ATPDIL1-4 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) AT2G47470 54 / 6e-08 ATPDI11, ATPDIL2-1, UNE5, MEE30 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) AT1G07960 52 / 6e-08 ATPDIL5-1 PDI-like 5-1 (.1.2.3) AT1G04980 55 / 8e-08 ATPDI10, ATPDIL2-2 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1) AT3G54960 53 / 3e-07 ATPDI1, ATPDIL1-3 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 1, PDI-like 1-3 (.1.2) AT2G32920 53 / 3e-07 ATPDI9, ATPDIL2-3 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 9, PDI-like 2-3 (.1) AT1G21750 44 / 0.0003 ATPDI5, ATPDIL1-1 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015560 [exp] 803 / 0 AT4G21990 663 / 0.0 PAPS REDUCTASE HOMOLOG 26, APS reductase 3 (.1.2) Lus10041307 [exp] 59 / 5e-09 AT5G60640 536 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) Lus10037403 [exp] 57 / 2e-08 AT5G60640 729 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) Lus10022581 [exp] 57 / 2e-08 AT5G60640 741 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) Lus10021478 [exp] 57 / 3e-08 AT5G60640 740 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) Lus10036125 [exp] 53 / 3e-08 AT1G07960 214 / 1e-72 PDI-like 5-1 (.1.2.3) Lus10020691 [exp] 54 / 1e-07 AT2G47470 473 / 3e-168 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Lus10015160 [exp] 53 / 2e-07 AT1G04980 621 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1) Lus10036337 [exp] 52 / 3e-07 AT2G47470 548 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G012100 [exp] 718 / 0 AT4G04610 697 / 0.0 PAPS REDUCTASE HOMOLOG 19, APS reductase 1 (.1) Potri.014G154200 [exp] 379 / 6e-129 AT4G21990 359 / 4e-121 PAPS REDUCTASE HOMOLOG 26, APS reductase 3 (.1.2) Potri.004G011525 [exp] 321 / 4e-109 AT4G21990 340 / 9e-117 PAPS REDUCTASE HOMOLOG 26, APS reductase 3 (.1.2) Potri.014G160000 [exp] 59 / 2e-09 AT1G04980 617 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1) Potri.009G013600 [exp] 58 / 7e-09 AT5G60640 712 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) Potri.009G004500 [exp] 54 / 2e-08 AT1G07960 182 / 3e-60 PDI-like 5-1 (.1.2.3) Potri.014G122800 [exp] 56 / 4e-08 AT2G47470 551 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Potri.002G198300 [exp] 52 / 4e-07 AT2G47470 530 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [flax] [poplar] HUP PF01507 [flax] [poplar] PAPS_reduct Phosphoadenosine phosphosulfate reductase family CL0172 [flax] [poplar] Thioredoxin PF00085 [flax] [poplar] Thioredoxin Thioredoxin
Representative CDS sequence Show only first row Show all	>Lus10020040 pacid=23156245 polypeptide=Lus10020040 locus=Lus10020040.g ID=Lus10020040.BGIv1.0 annot-version=v1.0 ATGGCTTTCGTTTCAACCCATTCCGCTACTGCCATTTCTGCTTCCAATCTCTCTTGCTCCACTGCTTCTGATCCCAAAGCTCTGATCACAGCTTCTCAAA TTGGATCATTCCGTCTGTTGGAACGCCCCCTCACCGTCAACCTTTCTTCTCATCGGCGCTCCTCTTCCGTCAAGCCGCTTAATGCCGAGCCCAAGCGTAC CGTTCCTCTTGCGGCTACCGTCGCTGCTCCTGATGTGGCAGACAAAGTGGACGAAGCGGAGGACTACGAGCTGTTGGCGAAGGAGCTGGAGATTGCTTCT CCCTTGCAAATTATGGACAAGGCTCTCGAGAAATTCGGTGACGATATTGCTATTGCCTTCAGTGGTGCTGAAGATGTTGCCCTGATAGAATATGCGAAGC TGACGGGAAGGCCATTCAGGGTGTTCAGCCTGGACACAGGGAGACTGAATCCCGAAACGTATCAGTTCTTCGATGCAGTTGAAAAGAAGTACGAAATCAG GATTGAGTACATGTTTCCTGATGCCGTGGAAGTGCAAGCACTAGTGAGGAACAAGGGGCTATTCTCCTTCTACGAGGATGGTCACCAAGAGTGCTGCCGT GTGAGGAAAGTGAGGCCATTGAGAAGAGCTCTCAAGGGGCTTCGAGCTTGGATCACCGGCCAGAGGAAAGACCAGTCTCCAGGGACGAGGTCTGAGATCC CTGTAGTGCAGGTGGATCCTGTTTTCGAAGGAATGGACGGTGGAGCTGGAAGCTTGATTAAATGGAACCCTGTGGCGAATGTAGATGGAAACGATGTGTG GAGCTTCCTCCGAGCCATGGAGGTTCCCGTGAACTCGCTGCATTCTCAAGGTTACATTTCGATCGGTTGTGAGCCGTGCACTAGGGCTGTGCTTCCGGGG CAGCACGAGAGGGAAGGGAGATGGTGGTGGGAGGATGCCAAGGCGAAAGAGGGTGGCCTTCACAAGGGGAATTTGAAGGAGGAGAATCAGGTGAAGGAGA ATGTGAATGGGAATGGAGGAGTTGCTGATATTTTCGAGTCTCGGAATTTGGTAGCGTTGAGCAGGGTTGGGATGGAGAACTTGCTGAGATTGGAGAAGAG GAAGGAGGCGTGGATAGTTGTGTTGTATGCTCCTTGGTGCCAGTACTGTCAGGCTATGGAGAGCTCGTATCTTGAACTTGCGGAGAAGTTGGAAGGTGTG AGTGGAGTGAAAGTGGGGAAGTTTCAGGCTGATGGCAAGCAGAAGGAATTTGCGAAGAACGAGCTGCAACTGGGAAGCTTCCCTACCATACTGTTCTTCC CTGCGCATTCGATTCGCCCGATCAAGTACCCTTCTGAGAATAGAGATGTAGATTCGTTGATGGCTTTTGTGAATGCGTTGAGGTAA
AA sequence Show only first row Show all	>Lus10020040 pacid=23156245 polypeptide=Lus10020040 locus=Lus10020040.g ID=Lus10020040.BGIv1.0 annot-version=v1.0 MAFVSTHSATAISASNLSCSTASDPKALITASQIGSFRLLERPLTVNLSSHRRSSSVKPLNAEPKRTVPLAATVAAPDVADKVDEAEDYELLAKELEIAS PLQIMDKALEKFGDDIAIAFSGAEDVALIEYAKLTGRPFRVFSLDTGRLNPETYQFFDAVEKKYEIRIEYMFPDAVEVQALVRNKGLFSFYEDGHQECCR VRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGMDGGAGSLIKWNPVANVDGNDVWSFLRAMEVPVNSLHSQGYISIGCEPCTRAVLPG QHEREGRWWWEDAKAKEGGLHKGNLKEENQVKENVNGNGGVADIFESRNLVALSRVGMENLLRLEKRKEAWIVVLYAPWCQYCQAMESSYLELAEKLEGV SGVKVGKFQADGKQKEFAKNELQLGSFPTILFFPAHSIRPIKYPSENRDVDSLMAFVNALR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G04610		1-Apr, PRH19, A...	PAPS REDUCTASE HOMOLOG 19, APS...		Lus10020040 [exp]	0	1
AT4G21990		3-Apr, PRH-26, ...	PAPS REDUCTASE HOMOLOG 26, APS...		Lus10015560 [exp]	1.0	0.9864
AT1G04770			Tetratricopeptide repeat (TPR)...		Lus10000753 [exp]	1.4	0.9128
AT2G19130			S-locus lectin protein kinase ...		Lus10024343 [exp]	5.3	0.7722
AT1G04770			Tetratricopeptide repeat (TPR)...		Lus10011738 [exp]	6.0	0.7822
AT4G02920			unknown protein		Lus10027996 [exp]	8.1	0.8249
AT4G00050	bHLH	bHLH016, UNE10	unfertilized embryo sac 10, ba...		Lus10042874 [exp]	8.1	0.7997
AT5G24660		LSU2	response to low sulfur 2 (.1)		Lus10032912 [exp]	8.8	0.7531
AT1G78510		SPS1	solanesyl diphosphate synthase...		Lus10013703 [exp]	11.5	0.7824
AT4G10770		ATOPT7	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10028445 [exp]	18.0	0.7627
AT4G18210		ATPUP10	purine permease 10 (.1)		Lus10038492 [exp]	18.0	0.7610

Compare expression of checked genes

Lus10020040 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.