Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04350 147 / 1e-40 EMB2369 EMBRYO DEFECTIVE 2369, tRNA synthetase class I (I, L, M and V) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015552 [exp] 231 / 3e-70 AT4G04350 1412 / 0.0 EMBRYO DEFECTIVE 2369, tRNA synthetase class I (I, L, M and V) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G009600 [exp] 160 / 4e-45 AT4G04350 1443 / 0.0 EMBRYO DEFECTIVE 2369, tRNA synthetase class I (I, L, M and V) family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020041 pacid=23156177 polypeptide=Lus10020041 locus=Lus10020041.g ID=Lus10020041.BGIv1.0 annot-version=v1.0 ATGGAATGTGGTGGTGGCAAGGACACAAAACAATGGAACACAAGTGGGATCGAAGGTGTATACCGTTTCTTGGGGAGAACGTGGAGGTTGATCGTTGGCC CACCTCTGGCTGATGGCAGTTTCAGAGATGGGAGTGTGGCGGTGGATATGGAACCTAGCTTTGAACAGCTTCGTTCTCTGCGCAGATGCATGGCTAAGTT TTGTTTCCTTCATCACATAGTTGGAAGTACAGATGGGATTGACATTAAGTATGTGTGTTTCGTAGTGGAAGAACCTCCCAAAAAGTATTGCGGAAACATT TGTGCTGGTGCTAGCACCATATGCGCCACACATATCAGAGGAACTTTGGTTTCGGCTGGGGCACCCAGAAACATTGGCTTACGAGCCATTCCCAGAGGCC ATGGCGGAGTACCTGAAGGATGCGAAAAAGCGCTGCCAGTTCAGGTGAACGGCAAGACGAAAGGAACGGTGGAGGTAGAGGAAGGTTGCTCGGAGGAGGA AGCGTTTCAAATAGCATCCCAGGACAGCAAGCTGTCGAGGTTTCTGCAGGAGAAACCAGTGGTGAAGATAATATACGTTCCAGGGAAGATATTGAACGTG ATAGTTGGCGGGAAGGGGGCAAAGCCCAATCCGAACGCTACACGGATTACCGTTTCATGA
AA sequence Show only first row Show all	>Lus10020041 pacid=23156177 polypeptide=Lus10020041 locus=Lus10020041.g ID=Lus10020041.BGIv1.0 annot-version=v1.0 MECGGGKDTKQWNTSGIEGVYRFLGRTWRLIVGPPLADGSFRDGSVAVDMEPSFEQLRSLRRCMAKFCFLHHIVGSTDGIDIKYVCFVVEEPPKKYCGNI CAGASTICATHIRGTLVSAGAPRNIGLRAIPRGHGGVPEGCEKALPVQVNGKTKGTVEVEEGCSEEEAFQIASQDSKLSRFLQEKPVVKIIYVPGKILNV IVGGKGAKPNPNATRITVS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G04350		EMB2369	EMBRYO DEFECTIVE 2369, tRNA sy...		Lus10020041 [exp]	0	1
					Lus10023803 [exp]	1.0	0.9602
AT1G53200			unknown protein		Lus10005971 [exp]	4.2	0.9072
AT2G32460	MYB	ATMYB101, AtM1	ARABIDOPSIS THALIANA MYB 1, my...		Lus10021539 [exp]	5.7	0.8539
AT3G24530			AAA-type ATPase family protein...		Lus10005293 [exp]	6.3	0.9073
AT3G28540			P-loop containing nucleoside t...		Lus10007270 [exp]	7.2	0.9211
AT5G14930		GENE101, SAG101	senescence-associated gene 101...		Lus10004841 [exp]	7.5	0.9079
AT1G23770			F-box family protein (.1)		Lus10011411 [exp]	9.3	0.8400
AT5G17540			HXXXD-type acyl-transferase fa...		Lus10020330 [exp]	10.1	0.9131
AT5G24670		TAD3, EMB2820	tRNA adenosine deaminase 3, EM...		Lus10040753 [exp]	10.5	0.8872
AT1G61100			disease resistance protein (TI...		Lus10025112 [exp]	10.7	0.8709

Compare expression of checked genes

Lus10020041 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.