Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05170 486 / 1e-172 Galactosyltransferase family protein (.1.2) AT1G11730 462 / 2e-163 Galactosyltransferase family protein (.1) AT2G32430 455 / 2e-160 Galactosyltransferase family protein (.1) AT4G26940 445 / 2e-156 Galactosyltransferase family protein (.1.2) AT1G32930 432 / 1e-151 Galactosyltransferase family protein (.1) AT1G77810 429 / 2e-150 Galactosyltransferase family protein (.1.2) AT1G22015 409 / 3e-142 DD46 Galactosyltransferase family protein (.1) AT1G33430 402 / 7e-140 Galactosyltransferase family protein (.1.2) AT5G53340 225 / 4e-71 Galactosyltransferase family protein (.1.2) AT4G32120 208 / 2e-64 Galactosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006782 [exp] 650 / 0 AT1G05170 512 / 0.0 Galactosyltransferase family protein (.1.2) Lus10001148 [exp] 495 / 3e-176 AT1G05170 458 / 4e-161 Galactosyltransferase family protein (.1.2) Lus10040062 [exp] 486 / 2e-172 AT1G05170 647 / 0.0 Galactosyltransferase family protein (.1.2) Lus10031567 [exp] 452 / 3e-159 AT1G05170 633 / 0.0 Galactosyltransferase family protein (.1.2) Lus10015107 [exp] 450 / 2e-158 AT1G05170 639 / 0.0 Galactosyltransferase family protein (.1.2) Lus10021538 [exp] 449 / 3e-158 AT1G05170 610 / 0.0 Galactosyltransferase family protein (.1.2) Lus10027185 [exp] 450 / 7e-158 AT1G05170 624 / 0.0 Galactosyltransferase family protein (.1.2) Lus10006933 [exp] 436 / 5e-153 AT1G77810 602 / 0.0 Galactosyltransferase family protein (.1.2) Lus10024750 [exp] 435 / 1e-152 AT1G77810 599 / 0.0 Galactosyltransferase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G004200 [exp] 505 / 2e-180 AT1G05170 520 / 0.0 Galactosyltransferase family protein (.1.2) Potri.004G013900 [exp] 498 / 2e-177 AT1G05170 547 / 0.0 Galactosyltransferase family protein (.1.2) Potri.014G153700 [exp] 486 / 2e-172 AT1G05170 699 / 0.0 Galactosyltransferase family protein (.1.2) Potri.002G228900 [exp] 466 / 1e-164 AT1G05170 673 / 0.0 Galactosyltransferase family protein (.1.2) Potri.001G450200 [exp] 433 / 7e-152 AT1G32930 625 / 0.0 Galactosyltransferase family protein (.1) Potri.005G171400 [exp] 426 / 4e-149 AT1G77810 594 / 0.0 Galactosyltransferase family protein (.1.2) Potri.002G089800 [exp] 425 / 1e-148 AT1G77810 611 / 0.0 Galactosyltransferase family protein (.1.2) Potri.011G151400 [exp] 410 / 9e-143 AT1G32930 615 / 0.0 Galactosyltransferase family protein (.1) Potri.019G067300 [exp] 403 / 2e-139 AT1G33430 560 / 0.0 Galactosyltransferase family protein (.1.2) Potri.003G136000 [exp] 242 / 1e-77 AT5G53340 484 / 3e-173 Galactosyltransferase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF01762 [flax] [poplar] Galactosyl_T Galactosyltransferase
Representative CDS sequence Show only first row Show all	>Lus10020042 pacid=23156121 polypeptide=Lus10020042 locus=Lus10020042.g ID=Lus10020042.BGIv1.0 annot-version=v1.0 ATGTTGGGTAAGAGTAGAGCAGGAGCTGCTGACTTTTCTGCAAAGAAACTCTTTTCCAGGAAATGGGCAATCTTCCTCTGCTTTGGCAGCTTCTTTGCTG GAACCCTCTTCACTAACAGAGGCAAAAAAGTTCTGTTGCTTTGCAGAACTCTAGATAACAAAATCTCACGTTTAGAGGCGAAATTAGCTGCTGCCAAGAC AAAGCAGAAAGCTCTAGCTGATGGAACTCTTGAATCAGGAGATTCGAAGAGGAACTACTCCGTGGTTATAGGGATAAATACATCTTTTAGCAGCCGGAAA AGAAGAGATTCAGTTCGTGCAACTTGGATGCCACAAGGGGAGAAAAGGAAGAGGCTGGAGAAGGACAAAGGCATGGTTATTCATTTCGTTATAGGTCACA GTTCAACATCTGGTGGCATTCTTGATAAAGCCATTGATGCAGAAGATAAGATGCATGGAGATTTCTTGAGGCTGGACCACGTTGAGGGATACTTGGAATT GTCTGCCAAGACCAAGACTTATTTTTCTACAGCTGTTGCTTTGTGGGATGCAGATTTCTATGTCAAAGTTGACGATGATGTTCATGTTAATATAGCAACA CTTGGATCAATACTATCAGAACATGCTACGAAGCCGAGAGTATATATTGGTTGCATGAAGTCTGGTCCTGTTCTTGCCAAAAAAGGAATAAGATATCATG AACCTGAATACTGGAAATTTGGAGCGGTTGGGAACAAGTATTTTCGCCATGCTACAGGACAACTTTATGCCATTTCTAAGGATGTGGCAACCTACATATC AGTTAACCAGCAATTGTTACACAAATTTGCAAACGAAGATGTTTCCATGGGGTCTTGGGTTCTTGGTCTCGAAGTGGAGCATGTGGATGAAAGGAGACTC TGCTGTGGTACTCCACCAGATTGCGAGATGAGGGCTCGACTCGGGACAACATGTGCAGTTTCGTTCGACTGGAAGTGCAGCGGGATTTGCCAATCAGTTG AGAGGATGGCTGAAGTTCACAAGCGTTGTGGTGAAGACGAGAATGCCATATGGAGTGCCACCACCCTCTGA
AA sequence Show only first row Show all	>Lus10020042 pacid=23156121 polypeptide=Lus10020042 locus=Lus10020042.g ID=Lus10020042.BGIv1.0 annot-version=v1.0 MLGKSRAGAADFSAKKLFSRKWAIFLCFGSFFAGTLFTNRGKKVLLLCRTLDNKISRLEAKLAAAKTKQKALADGTLESGDSKRNYSVVIGINTSFSSRK RRDSVRATWMPQGEKRKRLEKDKGMVIHFVIGHSSTSGGILDKAIDAEDKMHGDFLRLDHVEGYLELSAKTKTYFSTAVALWDADFYVKVDDDVHVNIAT LGSILSEHATKPRVYIGCMKSGPVLAKKGIRYHEPEYWKFGAVGNKYFRHATGQLYAISKDVATYISVNQQLLHKFANEDVSMGSWVLGLEVEHVDERRL CCGTPPDCEMRARLGTTCAVSFDWKCSGICQSVERMAEVHKRCGEDENAIWSATTL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05170			Galactosyltransferase family p...		Lus10020042 [exp]	0	1
AT4G28600		NPGR2	no pollen germination related ...		Lus10011793 [exp]	2.4	0.8315
AT5G11960			Protein of unknown function (D...		Lus10004444 [exp]	2.8	0.8276
AT3G03940			Protein kinase family protein ...		Lus10024261 [exp]	5.5	0.8017
AT5G60580			RING/U-box superfamily protein...		Lus10037410 [exp]	5.7	0.8027
AT4G08170			Inositol 1,3,4-trisphosphate 5...		Lus10020513 [exp]	5.9	0.8015
AT5G04850		VPS60.2	SNF7 family protein (.1.2)		Lus10034131 [exp]	6.9	0.7717
AT2G02410			unknown protein		Lus10026272 [exp]	8.9	0.8018
AT5G22000		RHF2A, CIC7E11	RING-H2 group F2A (.1.2.3)		Lus10013606 [exp]	11.5	0.8058
AT1G25375			Metallo-hydrolase/oxidoreducta...		Lus10005109 [exp]	11.7	0.7714
AT1G60430		ARPC3	actin-related protein C3 (.1.2...		Lus10018909 [exp]	16.7	0.8009

Compare expression of checked genes

Lus10020042 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.