Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04630 119 / 2e-34 Protein of unknown function, DUF584 (.1) AT4G21970 115 / 8e-33 Protein of unknown function, DUF584 (.1) AT3G45210 81 / 2e-19 Protein of unknown function, DUF584 (.1) AT1G11700 74 / 2e-16 Protein of unknown function, DUF584 (.1) AT5G60680 72 / 4e-16 Protein of unknown function, DUF584 (.1) AT1G61930 73 / 5e-16 Protein of unknown function, DUF584 (.1) AT5G03230 70 / 4e-15 Protein of unknown function, DUF584 (.1) AT4G26950 68 / 1e-14 Protein of unknown function, DUF584 (.1.2) AT2G28400 68 / 2e-14 Protein of unknown function, DUF584 (.1) AT3G15040 67 / 1e-13 Protein of unknown function, DUF584 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006781 [exp] 238 / 8e-81 AT4G21970 128 / 6e-38 Protein of unknown function, DUF584 (.1) Lus10021536 [exp] 92 / 4e-23 AT4G21970 102 / 1e-27 Protein of unknown function, DUF584 (.1) Lus10040067 [exp] 92 / 5e-23 AT4G21970 98 / 2e-25 Protein of unknown function, DUF584 (.1) Lus10020047 [exp] 82 / 1e-19 AT1G61930 124 / 8e-36 Protein of unknown function, DUF584 (.1) Lus10041309 [exp] 78 / 2e-18 AT5G60680 137 / 5e-42 Protein of unknown function, DUF584 (.1) Lus10006775 [exp] 75 / 8e-18 AT1G61930 110 / 4e-32 Protein of unknown function, DUF584 (.1) Lus10021474 [exp] 72 / 6e-16 AT5G60680 138 / 6e-42 Protein of unknown function, DUF584 (.1) Lus10002073 [exp] 71 / 4e-15 AT1G61930 156 / 5e-48 Protein of unknown function, DUF584 (.1) Lus10000724 [exp] 69 / 8e-15 AT3G45210 111 / 1e-31 Protein of unknown function, DUF584 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G014000 [exp] 142 / 6e-43 AT4G04630 124 / 4e-36 Protein of unknown function, DUF584 (.1) Potri.011G004100 [exp] 141 / 1e-42 AT4G04630 125 / 1e-36 Protein of unknown function, DUF584 (.1) Potri.004G211100 [exp] 86 / 4e-21 AT5G60680 120 / 1e-34 Protein of unknown function, DUF584 (.1) Potri.009G014100 [exp] 82 / 6e-20 AT3G45210 124 / 2e-36 Protein of unknown function, DUF584 (.1) Potri.004G015700 [exp] 81 / 7e-19 AT1G11700 151 / 5e-46 Protein of unknown function, DUF584 (.1) Potri.011G003300 [exp] 78 / 6e-18 AT1G11700 161 / 6e-50 Protein of unknown function, DUF584 (.1) Potri.016G089900 [exp] 75 / 3e-17 AT5G03230 115 / 6e-33 Protein of unknown function, DUF584 (.1) Potri.006G127900 [exp] 68 / 1e-14 AT5G03230 122 / 1e-35 Protein of unknown function, DUF584 (.1) Potri.016G076300 [exp] 64 / 8e-13 AT3G15040 90 / 9e-22 Protein of unknown function, DUF584 (.1) Potri.011G076900 [exp] 56 / 3e-10 AT1G29640 90 / 4e-24 Protein of unknown function, DUF584 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04520 [flax] [poplar] Senescence_reg Senescence regulator
Representative CDS sequence Show only first row Show all	>Lus10020043 pacid=23156216 polypeptide=Lus10020043 locus=Lus10020043.g ID=Lus10020043.BGIv1.0 annot-version=v1.0 ATGGCGGATTGGTACAGCAGGAGCAGCAGAAGCATAACAAGCAGGAGGAGCATGAGGAACAATGGCGATTTTGAGGAATCGGAGATTTGGTCGGTGATGA AAGAAATGGAAGGCGGCGGCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCATCGACTCCTAAACTGATCAGGAAACCTTCCCCTGCCACGTGGCGCGC TGCCAGTACTTCTCCCAGAGCCATCAAACCAACAAAAACGACAGCAACATCGGAGGGGCAGAAGATGATAAGTAGTGTCGGGAGATCATCTGCTCCGATG AACATTCCTGATTGGTCAAAGATTTACGGGGTTGACTCCTCGGCTGGGAATGACAACAATGATGAAGTGGACGATGAAGAAGATGATGAAGACGACGTCG TCCCGCCTCATGAATGGCTAGCGAAGAGGCTTGCCAGGTCCCAGATTTCTTCCTTCTCTGTTTGCGAAGGGATTGGGAGGACTCTCAAGGGAAGAGATCT AAGCAAAGTCAGGAACGCCATTTTGACCAAAACTGGGTTCCTTGAGTGA
AA sequence Show only first row Show all	>Lus10020043 pacid=23156216 polypeptide=Lus10020043 locus=Lus10020043.g ID=Lus10020043.BGIv1.0 annot-version=v1.0 MADWYSRSSRSITSRRSMRNNGDFEESEIWSVMKEMEGGGSSSSSSSSSSSSTPKLIRKPSPATWRAASTSPRAIKPTKTTATSEGQKMISSVGRSSAPM NIPDWSKIYGVDSSAGNDNNDEVDDEEDDEDDVVPPHEWLAKRLARSQISSFSVCEGIGRTLKGRDLSKVRNAILTKTGFLE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21970			Protein of unknown function, D...		Lus10020043 [exp]	0	1
AT2G37630	MYB	AtPHAN, AtMYB91...	ARABIDOPSIS PHANTASTICA-LIKE 1...		Lus10025355 [exp]	2.2	0.8626
AT1G75080	BZR	BZR1	BRASSINAZOLE-RESISTANT 1, Bras...		Lus10014326 [exp]	4.9	0.8256
AT4G34940		ARO1	armadillo repeat only 1 (.1)		Lus10025059 [exp]	11.2	0.7999
AT2G37630	MYB	AtPHAN, AtMYB91...	ARABIDOPSIS PHANTASTICA-LIKE 1...		Lus10024392 [exp]	11.8	0.8287
AT3G54560		HTA11	histone H2A 11 (.1)		Lus10014717 [exp]	14.7	0.8163
AT1G53800			unknown protein		Lus10037460 [exp]	15.5	0.8010
AT1G75080	BZR	BZR1	BRASSINAZOLE-RESISTANT 1, Bras...		Lus10014327 [exp]	20.8	0.8042
AT2G38025			Cysteine proteinases superfami...		Lus10027758 [exp]	22.8	0.8306
AT5G58250		EMB3143	EMBRYO DEFECTIVE 3143, unknown...		Lus10035110 [exp]	24.0	0.8307
AT3G53900		UPP, PYRR	PYRIMIDINE R, uracil phosphori...		Lus10024350 [exp]	29.0	0.8067

Compare expression of checked genes

Lus10020043 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.