Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11720 1401 / 0 ATSS3 starch synthase 3 (.1.2) AT4G18240 399 / 2e-121 ATSS4, SSIV ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) AT3G01180 186 / 3e-48 ATSS2 starch synthase 2 (.1) AT5G24300 162 / 4e-41 SSI1, SSI, ATSS1 STARCH SYNTHASE 1, Glycogen/starch synthases, ADP-glucose type (.1.2) AT1G32900 149 / 3e-37 GBSS1 granule bound starch synthase 1, UDP-Glycosyltransferase superfamily protein (.1) AT5G65685 119 / 4e-28 UDP-Glycosyltransferase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006780 [exp] 2003 / 0 AT1G11720 1529 / 0.0 starch synthase 3 (.1.2) Lus10023319 [exp] 388 / 2e-117 AT4G18240 1303 / 0.0 ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) Lus10038491 [exp] 384 / 4e-116 AT4G18240 1278 / 0.0 ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) Lus10028133 [exp] 379 / 8e-114 AT4G18240 1285 / 0.0 ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) Lus10042837 [exp] 375 / 3e-111 AT4G18240 1281 / 0.0 ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) Lus10033014 [exp] 178 / 6e-46 AT3G01180 973 / 0.0 starch synthase 2 (.1) Lus10022398 [exp] 176 / 6e-46 AT5G24300 874 / 0.0 STARCH SYNTHASE 1, Glycogen/starch synthases, ADP-glucose type (.1.2) Lus10018116 [exp] 177 / 7e-46 AT5G24300 855 / 0.0 STARCH SYNTHASE 1, Glycogen/starch synthases, ADP-glucose type (.1.2) Lus10015371 [exp] 171 / 1e-43 AT3G01180 928 / 0.0 starch synthase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G014100 [exp] 1534 / 0 AT1G11720 1460 / 0.0 starch synthase 3 (.1.2) Potri.001G351800 [exp] 389 / 1e-117 AT4G18240 1293 / 0.0 ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) Potri.018G149500 [exp] 327 / 3e-99 AT4G18240 449 / 4e-146 ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) Potri.017G084100 [exp] 185 / 2e-48 AT3G01180 985 / 0.0 starch synthase 2 (.1) Potri.015G012400 [exp] 165 / 4e-42 AT5G24300 904 / 0.0 STARCH SYNTHASE 1, Glycogen/starch synthases, ADP-glucose type (.1.2) Potri.011G152200 [exp] 164 / 6e-42 AT1G32900 880 / 0.0 granule bound starch synthase 1, UDP-Glycosyltransferase superfamily protein (.1) Potri.007G009600 [exp] 163 / 2e-41 AT5G65685 507 / 2e-174 UDP-Glycosyltransferase superfamily protein (.1.2) Potri.001G449500 [exp] 145 / 9e-36 AT1G32900 922 / 0.0 granule bound starch synthase 1, UDP-Glycosyltransferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0576 [flax] [poplar] STARBD PF03423 [flax] [poplar] CBM_25 Carbohydrate binding domain (family 25) CL0113 [flax] [poplar] GT-B PF08323 [flax] [poplar] Glyco_transf_5 Starch synthase catalytic domain
Representative CDS sequence Show only first row Show all	>Lus10020044 pacid=23156236 polypeptide=Lus10020044 locus=Lus10020044.g ID=Lus10020044.BGIv1.0 annot-version=v1.0 ATGGAAGTCAGTTTGCAGGTACAAAGGTCGCTCACTTCTTGCAGAAGAGCTAGCTCTCATGATAAACCCCGTTTCAAGATCACACCTTTTTCTGGGTCTG GGTCTTTCTCTCCTCTCCGAACTACCACTCATTTCATCAGTCTGGCAGCTTGGTGCACTTCATCTGGCTTCTCATTGCAAGTCACTGCCAGTTCGGACTT CTCTGGAAGAAAAGGCAAAAAATTGTCCCATGGGAGGCCTAAAACCTCTGCCCCAAAGGGGTTTGTGCCAAAAACATCCTCGGTACCAAGAAGGGAACCA AAGCAATATGGAAGTAAGAACGATGCAGATGATCGCTCTCCAGACAATCATGTTGAGAGTGTGAAGACAATGCAGGATGAATCGAAAACCACCAGAAAGG TAACAGTTACTGAGACCAGTCTATCGGTGAAGAATGGAAGTGTTGGTAGCAATGAGAGCACTGAAACTAGTTTAGGCGGGACACATTTTGATGATTTAGT AGAGGAGGAGGAGGAAGATAGCAGAATTGACAAAGCAAAGGAAGAAGCTTTCCTTGCATTGAAGTTGGAAAGTGAAGAAAACTTGAGGAGGCAAGAAATC GAGGTGCTTGCTGAAAAAAGCTTCTCTAAGGGGGAGAAGATGTTTGTTTATCCTCAGATTGTTAACCCTGATCAAGAGGTGGAGGTATTCCTTAACAGGA GACTATCTAGTTTGGAAAATGAGTCTGAGATTCTAGTTATGGGAGCTTTTAATGACTGGAAATGGAAGTCCTTTACGGCGAGATTGAGTAAAACCCATCT GAGAGAGGATTGGTGGTCTTGCCGCATTCAAATTCCCAAAGAAGCATATAAGATAGACTTTGTGTTCTTCAATGGACGGAATGTGTATGATAACAATGGC AGAAAGGACTACTGTGTTCCCGTGGAAGGTGGGATGGATGAATTTGCATTTGAGGATTTTTTGCTCGAGGAAAAACAGAGGGAGCTAAAGAGACTCGCTG AAGAGAATGCTGAGAAGGAAAGACAGGCTGAAGAACAGCGGCGAATGGAAGCAGATATGGCTGCAAGGGAAGCTGATAGGCTTCAAGCAAAGACGGAAAC TGAGAAGAGGCGTGAATTGTTGCAAAAAGTAATGCAAAAGGCTGTAAGATCAGTTGAAAATGTTTGGTTCATAGAGCCTCGTGAGTTCAAAGGACTGGAC AGAGTCAGGTTATTCTATAACAAAAGCTCAGGTCCACTTGCTCATTCCAACGACCTCTGGATACACGGAGGCCATGACAACTGGAATGATGGATTGTCTA TTGTTCAAAAGTTTGCCAAGTTTGAAAGGAAGAAGGATGGTGACTGGTGGTATACGAATGTCGTTGTTCCTGATGGAGCACTCGTCTTAGACTGGGTGTT TGCTGATGGTCCACCTCAAAGTGCTGCTGTTTATGATAATAACCGTTTGCAAGATTTCCATGCAATTGTCCCAAACAACATTCCTGAAGACGTGTATTGG GTAGAGGAGGAACACAAGTTATACAGAAAGCTACAGGAGGAGAGGAGGGGAAGAGAGGAGGCTCTACGTGCGAAGGCTGAAAAGACACGACGCATCAAAG CTGAAACAAAGGAAAGAACTCTCAGGAGGTTTCTGCTCTCGCAGAAGCACATATTCTATACTGAACCACTTGATGTCCAGGCTGGAAGTGACGTCACGGT CTTTTACAATCCTGCAAACACGGTACTGAATGGAAAATCTGAAGTTTGGTTCAGAGGGTCTTTTAATCGATGGACACACCGCAAGGGGCCATTGCCACCT CAGAAAATGTTGCTTGCTGACGATGGTTTGCATGTCAAAGCCACTGTGAGGGTGCCTCTGGATGCATACATGATGGATTTTGTGTTCTCTGACAAGGAAG ATGGGGGGACCTTTGACAACAGAGACCGCATGGATTACCATGTTCCTGTTCTTGGAGGAATCGCAAAGGAGTCACCTATGAATATTGTGCATATAGCCGT TGAAATGGCTCCCATTGCAAAGGTTGGAGGACTTGGTGATGTTGTGACTAGTCTGTCTCGTGCTGTTCAAGATTTAAACCACAATGTGAACATCATTCTC CCAAAGTATGACTGCTTGAAACTTAATCATGTGAAAGACCTTCAATTCCACCGAAGCTATTCGTGGGGTGGCACTGAAATAAAAGTCTGGCTTGGGAAAG TGGAAAGCGTATCTGTCTATTTCTTGGAGCCTCAGAATGGTATGTTTTGGACAGGCTGTATATATGGATGCCGTAATGATGGGGAGAGATTTGGTTTCTT TTGCCATGCAGCTCTTGAATTCTTACTTCAAAGTGGATCTCATCCTGATATTATCCACTGTCATGATTGGTCCAGTGCCCCAGTGGCATGGTTGTTCAAG GACCATTACGTGCACTATGGTCTTAGTAAAGCTCGCATCGTGTTCACTATTCACAACCTCGAGTTTGGGGCTCAAAACATTAGTAAAGCCATGGCATACT CTGATAAGGCTACGACTGTATCTCCAACGTACGCAACAGAGGTTGCTGGGAATGGTGCAGTTGCTCCTCATTTATACAAGTTCCATGGCATACTAAACGG AATAGACCAAGATATATGGGATCCTTACAATGATCAATTCATTCCTGTAGATTACACTTCTGAGAATGTTATTGAAGGCAAAAGAGCTGCCAAGGAAGCC CTGCAAGAGAGGCTTGTTTTGAAGAGGGCCAATCTCCCTCTAGTGGGTATCATTACGCGTTTAACACACCAGAAAGGAATTCATCTCATTAAACATGCGA TTTGGCGCACCTTAGAACGGGGCGGACAGGTAGTACTGCTCGGGTCAGCTCCAGATCCTCGGATACAGAACGATTTTGTGGGTCTGGCCAACCAGTTGCA TTCTACCCATGGAGACCGTGCTCGCCTTTGTTTGACATATGACGAGCCTCTTTCCCACTTGATCTATGCTGGATCAGATTTCATGTTGGTTCCTTCCATA TTCGAGCCATGTGGATTAACACAACTTACAGCCATGAGATATGGACTCTTCGACACTGTGTTTGACGTAGACGATGATAAAGAAAGGGCACAATCTCAAG GCATTGAACCAAATGGTTTCAACTTTGAAGGAGCAGACGCTTCTGGCGTCGACTATGCCCTTAATAGGGCAATTTCTGCTTGGTACGATGGTCGGGATTG GTTCAACGCATTATGTAAAACAGTAATGGAGCAAGATTGGTCATGGAATAAGCCAGCTCTTGACTACATGGAGCTTTACCACTCTGCCCGGAAGTGA
AA sequence Show only first row Show all	>Lus10020044 pacid=23156236 polypeptide=Lus10020044 locus=Lus10020044.g ID=Lus10020044.BGIv1.0 annot-version=v1.0 MEVSLQVQRSLTSCRRASSHDKPRFKITPFSGSGSFSPLRTTTHFISLAAWCTSSGFSLQVTASSDFSGRKGKKLSHGRPKTSAPKGFVPKTSSVPRREP KQYGSKNDADDRSPDNHVESVKTMQDESKTTRKVTVTETSLSVKNGSVGSNESTETSLGGTHFDDLVEEEEEDSRIDKAKEEAFLALKLESEENLRRQEI EVLAEKSFSKGEKMFVYPQIVNPDQEVEVFLNRRLSSLENESEILVMGAFNDWKWKSFTARLSKTHLREDWWSCRIQIPKEAYKIDFVFFNGRNVYDNNG RKDYCVPVEGGMDEFAFEDFLLEEKQRELKRLAEENAEKERQAEEQRRMEADMAAREADRLQAKTETEKRRELLQKVMQKAVRSVENVWFIEPREFKGLD RVRLFYNKSSGPLAHSNDLWIHGGHDNWNDGLSIVQKFAKFERKKDGDWWYTNVVVPDGALVLDWVFADGPPQSAAVYDNNRLQDFHAIVPNNIPEDVYW VEEEHKLYRKLQEERRGREEALRAKAEKTRRIKAETKERTLRRFLLSQKHIFYTEPLDVQAGSDVTVFYNPANTVLNGKSEVWFRGSFNRWTHRKGPLPP QKMLLADDGLHVKATVRVPLDAYMMDFVFSDKEDGGTFDNRDRMDYHVPVLGGIAKESPMNIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLNHNVNIIL PKYDCLKLNHVKDLQFHRSYSWGGTEIKVWLGKVESVSVYFLEPQNGMFWTGCIYGCRNDGERFGFFCHAALEFLLQSGSHPDIIHCHDWSSAPVAWLFK DHYVHYGLSKARIVFTIHNLEFGAQNISKAMAYSDKATTVSPTYATEVAGNGAVAPHLYKFHGILNGIDQDIWDPYNDQFIPVDYTSENVIEGKRAAKEA LQERLVLKRANLPLVGIITRLTHQKGIHLIKHAIWRTLERGGQVVLLGSAPDPRIQNDFVGLANQLHSTHGDRARLCLTYDEPLSHLIYAGSDFMLVPSI FEPCGLTQLTAMRYGLFDTVFDVDDDKERAQSQGIEPNGFNFEGADASGVDYALNRAISAWYDGRDWFNALCKTVMEQDWSWNKPALDYMELYHSARK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11720		ATSS3	starch synthase 3 (.1.2)		Lus10020044 [exp]	0	1
AT5G19500			Tryptophan/tyrosine permease (...		Lus10036527 [exp]	5.7	0.8493
AT5G19500			Tryptophan/tyrosine permease (...		Lus10041401 [exp]	7.3	0.8495
AT2G28880		ADCS, EMB1997	embryo defective 1997, aminode...		Lus10041403 [exp]	7.7	0.8426
AT4G23430		AtTic32-IVa	translocon at the inner envelo...		Lus10038857 [exp]	9.0	0.8542
AT4G30080	ARF	ARF16	auxin response factor 16 (.1)		Lus10026510 [exp]	11.4	0.8217
AT5G22000		RHF2A, CIC7E11	RING-H2 group F2A (.1.2.3)		Lus10016195 [exp]	16.7	0.8441
AT2G47240		CER8, LACS1	LONG-CHAIN ACYL-COA SYNTHASE 1...		Lus10032840 [exp]	19.0	0.8323
AT1G05200		GLUR3, ATGLR3.4	glutamate receptor 3.4 (.1.2)		Lus10039671 [exp]	20.2	0.8247
AT4G12110		ATSMO1-1, SMO1-...	sterol-4alpha-methyl oxidase 1...		Lus10004321 [exp]	20.6	0.8105
AT1G12330			unknown protein		Lus10028918 [exp]	20.7	0.7923

Compare expression of checked genes

Lus10020044 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.