Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21960 467 / 1e-166 PRXR1 Peroxidase superfamily protein (.1) AT2G37130 337 / 4e-116 Peroxidase superfamily protein (.1.2) AT5G40150 180 / 3e-54 Peroxidase superfamily protein (.1) AT2G18140 171 / 2e-50 Peroxidase superfamily protein (.1) AT5G06730 169 / 1e-49 Peroxidase superfamily protein (.1) AT4G17690 168 / 1e-49 Peroxidase superfamily protein (.1) AT2G18150 167 / 4e-49 Peroxidase superfamily protein (.1) AT3G28200 166 / 4e-49 Peroxidase superfamily protein (.1) AT3G50990 167 / 6e-49 Peroxidase superfamily protein (.1) AT1G71695 166 / 1e-48 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006778 [exp] 601 / 0 AT4G21960 540 / 0.0 Peroxidase superfamily protein (.1) Lus10015074 [exp] 339 / 2e-116 AT2G37130 498 / 5e-179 Peroxidase superfamily protein (.1.2) Lus10041784 [exp] 166 / 9e-49 AT5G66390 519 / 0.0 Peroxidase superfamily protein (.1) Lus10027163 [exp] 165 / 2e-48 AT4G11290 491 / 4e-176 Peroxidase superfamily protein (.1) Lus10042144 [exp] 163 / 1e-47 AT1G24110 390 / 2e-136 Peroxidase superfamily protein (.1) Lus10009898 [exp] 163 / 1e-47 AT1G14550 448 / 1e-159 Peroxidase superfamily protein (.1) Lus10010716 [exp] 162 / 2e-47 AT1G24110 407 / 4e-143 Peroxidase superfamily protein (.1) Lus10018374 [exp] 162 / 2e-47 AT3G01190 414 / 4e-146 Peroxidase superfamily protein (.1) Lus10027164 [exp] 162 / 2e-47 AT1G05260 463 / 3e-165 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G015300 [exp] 506 / 0 AT4G21960 538 / 0.0 Peroxidase superfamily protein (.1) Potri.006G129900 [exp] 340 / 1e-116 AT2G37130 489 / 2e-175 Peroxidase superfamily protein (.1.2) Potri.012G076500 [exp] 178 / 2e-53 AT4G17690 423 / 1e-149 Peroxidase superfamily protein (.1) Potri.007G074700 [exp] 176 / 1e-52 AT5G47000 358 / 8e-124 Peroxidase superfamily protein (.1) Potri.007G122200 [exp] 172 / 5e-51 AT5G15180 395 / 2e-138 Peroxidase superfamily protein (.1) Potri.007G122301 [exp] 170 / 2e-50 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122250 [exp] 170 / 2e-50 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122401 [exp] 170 / 2e-50 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122351 [exp] 170 / 2e-50 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.002G065300 [exp] 170 / 4e-50 AT1G71695 468 / 2e-166 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10020045 pacid=23156208 polypeptide=Lus10020045 locus=Lus10020045.g ID=Lus10020045.BGIv1.0 annot-version=v1.0 ATGGAGCATCACAAAGCTCTCTTCTACTTGTGCTTCTTATCCTTAACAGTCTCAGCATTTGCTCAACAAGAGTCCATCAGCAATGAAGAAACCAAAACAA CAGGGCTAGTGATGGACTTCTACAAGGACAGCTGCCCTCAAGCAGAGGACATAATCAGAGAGCAAGTCAAGCTTCTGTACAAGAGGCACAAGAACACTGC TTTCTCTTGGCTCAGAAACATCTTCCATGACTGCGCTGTTCAGTCGTGTGATGCTTCCCTGCTGTTGGATTCAACGAGGAGGTCTCTGTCTGAAAAGGAG ACAGACAGGAGCTTTGGTCTGAGGAATTTCAGGTATCTTGACACCATCAAAGAAGCTGTGGAGAGGGAATGCCCTGGTGTCGTCTCCTGTGCTGACATTG AGCAAGATTCTAAATTTGGAGAGAGAAGAAGGGATGGAAGGAAGAGCAGAGCAGAAATCCTTGAGGAATATCTTCCAGATCATAATGAGAGCATGTCTGT AGTCCTTGACAGGTTCGCCGCCATGGGGATCGATACTCCTGGACTCGTTGCCTTGCTAGGGTCCCACAGCGTGGGAAGAACCCACTGCGTGAAGCTGGTT CATCGTCTCTACCCGGACGTTGATCCAGCTTTGAACCCTGACCATGTCGGCCACATGCTGAAGAAATGCCCCAACCCGATCCCAGACCCGAAGGCAGTGC AGTATGTGCGAAATGACCGCGGCACCCCTATGATTCTGGACAACAACTACTACAGGAACATACTTGAGAACAAAGGGTTGTTGATCGTGGATCACCAGCT TGCTACCGACAAGAGGACTAAGCCTTATGTGAAGAAGATGGCTAAGAGCCAGGACTACTTCTTCAAGCACTTCGCCAGGGCAATCACCAAGCTTTCGGAG AACAACCCTCTCACTGGGGATAAGGGTGAGATTAGGAGGCAGTGCAGCGTTGTCAACAAGGTGATCCATTGA
AA sequence Show only first row Show all	>Lus10020045 pacid=23156208 polypeptide=Lus10020045 locus=Lus10020045.g ID=Lus10020045.BGIv1.0 annot-version=v1.0 MEHHKALFYLCFLSLTVSAFAQQESISNEETKTTGLVMDFYKDSCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRRSLSEKE TDRSFGLRNFRYLDTIKEAVERECPGVVSCADIEQDSKFGERRRDGRKSRAEILEEYLPDHNESMSVVLDRFAAMGIDTPGLVALLGSHSVGRTHCVKLV HRLYPDVDPALNPDHVGHMLKKCPNPIPDPKAVQYVRNDRGTPMILDNNYYRNILENKGLLIVDHQLATDKRTKPYVKKMAKSQDYFFKHFARAITKLSE NNPLTGDKGEIRRQCSVVNKVIH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21960		PRXR1	Peroxidase superfamily protein...		Lus10020045 [exp]	0	1
AT1G48590			Calcium-dependent lipid-bindin...		Lus10003710 [exp]	3.2	0.8952
AT3G47570			Leucine-rich repeat protein ki...		Lus10030630 [exp]	4.0	0.8900
AT3G05170			Phosphoglycerate mutase family...		Lus10032291 [exp]	5.2	0.8897
AT4G21960		PRXR1	Peroxidase superfamily protein...		Lus10006778 [exp]	6.9	0.8887
AT1G60783			unknown protein		Lus10004622 [exp]	9.2	0.8881
AT3G05170			Phosphoglycerate mutase family...		Lus10024659 [exp]	9.5	0.8867
AT2G46640			unknown protein		Lus10005993 [exp]	9.9	0.8751
AT5G61820			unknown protein		Lus10033851 [exp]	11.4	0.8669
AT5G27420		CNI1, ATL31	carbon/nitrogen insensitive 1 ...		Lus10043034 [exp]	13.2	0.8517
AT2G36270	bZIP	EEL, GIA1, ABI5	GROWTH-INSENSITIVITY TO ABA 1,...		Lus10022720 [exp]	13.9	0.8682

Compare expression of checked genes

Lus10020045 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.