Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04720 755 / 0 CPK21 calcium-dependent protein kinase 21 (.1) AT3G20410 724 / 0 CPK9 calmodulin-domain protein kinase 9 (.1) AT4G21940 720 / 0 CPK15 calcium-dependent protein kinase 15 (.1.2) AT1G50700 720 / 0 CPK33 calcium-dependent protein kinase 33 (.1) AT1G61950 688 / 0 CPK19 calcium-dependent protein kinase 19 (.1) AT1G76040 667 / 0 CPK29 calcium-dependent protein kinase 29 (.1.2) AT4G04740 658 / 0 CPK23, ATCPK23 calcium-dependent protein kinase 23 (.1.2) AT5G12180 646 / 0 CPK17 calcium-dependent protein kinase 17 (.1) AT5G19360 644 / 0 CPK34 calcium-dependent protein kinase 34 (.1) AT4G23650 620 / 0 CDPK6, CPK3 Calcium dependent protein kinase 3, calcium-dependent protein kinase 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006777 [exp] 1001 / 0 AT4G04720 764 / 0.0 calcium-dependent protein kinase 21 (.1) Lus10021531 [exp] 737 / 0 AT3G20410 831 / 0.0 calmodulin-domain protein kinase 9 (.1) Lus10040071 [exp] 733 / 0 AT3G20410 825 / 0.0 calmodulin-domain protein kinase 9 (.1) Lus10032640 [exp] 714 / 0 AT3G20410 790 / 0.0 calmodulin-domain protein kinase 9 (.1) Lus10017251 [exp] 692 / 0 AT1G76040 807 / 0.0 calcium-dependent protein kinase 29 (.1.2) Lus10005619 [exp] 664 / 0 AT1G76040 773 / 0.0 calcium-dependent protein kinase 29 (.1.2) Lus10038460 [exp] 638 / 0 AT5G12180 916 / 0.0 calcium-dependent protein kinase 17 (.1) Lus10000889 [exp] 634 / 0 AT5G12180 907 / 0.0 calcium-dependent protein kinase 17 (.1) Lus10036050 [exp] 632 / 0 AT5G19360 908 / 0.0 calcium-dependent protein kinase 34 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G003400 [exp] 766 / 0 AT4G04720 815 / 0.0 calcium-dependent protein kinase 21 (.1) Potri.004G015500 [exp] 755 / 0 AT4G04720 797 / 0.0 calcium-dependent protein kinase 21 (.1) Potri.002G017000 [exp] 675 / 0 AT1G76040 758 / 0.0 calcium-dependent protein kinase 29 (.1.2) Potri.005G245000 [exp] 665 / 0 AT1G76040 729 / 0.0 calcium-dependent protein kinase 29 (.1.2) Potri.001G097400 [exp] 648 / 0 AT4G23650 781 / 0.0 Calcium dependent protein kinase 3, calcium-dependent protein kinase 6 (.1) Potri.003G134000 [exp] 644 / 0 AT4G23650 776 / 0.0 Calcium dependent protein kinase 3, calcium-dependent protein kinase 6 (.1) Potri.009G069200 [exp] 639 / 0 AT5G12180 914 / 0.0 calcium-dependent protein kinase 17 (.1) Potri.001G274700 [exp] 631 / 0 AT5G12180 909 / 0.0 calcium-dependent protein kinase 17 (.1) Potri.010G244800 [exp] 582 / 0 AT5G04870 899 / 0.0 calcium dependent protein kinase 1 (.1) Potri.008G014700 [exp] 580 / 0 AT5G04870 922 / 0.0 calcium dependent protein kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0220 [flax] [poplar] EF_hand PF00036 [flax] [poplar] EF-hand_1 EF hand
Representative CDS sequence Show only first row Show all	>Lus10020046 pacid=23156112 polypeptide=Lus10020046 locus=Lus10020046.g ID=Lus10020046.BGIv1.0 annot-version=v1.0 ATGGGATGTTCCAGTAGCAAAGGACCACACTCGCCTTCTTCCTCTTCCAAGCCAGAATCCAACGGCTACACACCTCCCACCGCCTACCAACGCCACAACC AGCAACGTCAGCCTCAGTACGACTACGCTCCACTACCTCCTCCTCCTCCTCCTACTACTACTACTAACCCTCCGCCGCCGCCGCCCACTTCCGCCGCCAA AAGGACCGTCAAGAAGCCGGAGACTATATTAGGGAAGCCATTCGAGGACATCAAGCAGTTCTACACGCTGGGTAAAGAACTGGGTCGTGGCCAATTCGGC ATTACTTATCTCTGCACGGAAAATTCCACGGGGAAAAACTACGCCTGCAAGACGATACTCAAGAGGAAATTGGGGAGCAAGAGCGACAGAGAAGACGTCA GGAGGGAGATTAAGATTATGCAGCACCTTTCCGGTCAGCCTAACATTGTCGAATTCAGAGGCTGTTACGAGGAGAGGCTTGCGGTTCATTTGGTGATGGA GCTTTGCGCCGGCGGGGAGCTCTTTGATCGGATTATTACTAAAGGTCATTACTCTGAAAAGGATGCTGCCAAGATTTGTAGGGAGATCGTGAATGTTGTC CACGCTTGCCATTTTATGGGGATTATGCATCGTGATCTCAAGCCTGAGAATTTCTTGTTTGATTCCGCTGATGAACTTGCTACTCTTAAGGCCACTGATT TTGGACTCTCTGTCTTCACTCAAGATGGCAAAGTTTACGGAGACATGTTGGGAAGTGCGTACTATGTTGCTCCAGAAGTGTTGCGACGAAGTTATGGGAA GGAGATCGATATTTGGAGCGCCGGAGTTATTATGTACATTCTACTCACTGGCGTGCCTCCATTCTGGGGAGATAATGAGAAGGGTATATTTGATTCCATT CTTAAAGGACATGTCGATTTCGAAGGTGAACCCTGGCCGTCCATATCTGAAAGTGCCAAAGATCTGATTAGGAAGATGCTAATTCAGGACCCAAAGAAAC GTTTAACTTCTGCACAGGTTCTAGAGCATCCATGGATCAAGGGTGGTGCAGCATCAGACAAACCTATAGGTAGCGCAGTAGTATCCAGAATTAAGCATTT CAGGGCAATGAACAATATGAAGAAGCTTGCCTTGAAGGTTATAGCTGCGAATCTGTCTGAAGAAGATATTAGAGGTCTAAACACAGTGTTTATGAACCTG GACACTGACCAGAGTGGTACGATTACCTTTGAAGAACTGAAGATAGGTTTGGCTCGATTGGGATCAAAGCTATCCGAAACTGAGGTTAAGCAACTCATGG TAGCGGCTGATGTGGATGGGAATGGAACCATTGACTACTCCGAGTTCATATCTGCAACGATGCACAGATATAGGCTTGAAAAACATGAGCATCTGTACAA AGCATTTCAGCACTTTGATAAAGATGGTAGTGGGTATATAACAAGAGAGGATCTAACAAACGCAATGGTGGAGTACGGAATAGGGGATGAAGCCAACGTT ATGGACATCATCGATGAGGTGGACACAGACCATGATGGAAGAATCAACTACGACGAATTCTGTGTGATGATGAGAAGTGGGTCAGAGGTTCAACCACTAC CTTTCCCAAATCCTTAG
AA sequence Show only first row Show all	>Lus10020046 pacid=23156112 polypeptide=Lus10020046 locus=Lus10020046.g ID=Lus10020046.BGIv1.0 annot-version=v1.0 MGCSSSKGPHSPSSSSKPESNGYTPPTAYQRHNQQRQPQYDYAPLPPPPPPTTTTNPPPPPPTSAAKRTVKKPETILGKPFEDIKQFYTLGKELGRGQFG ITYLCTENSTGKNYACKTILKRKLGSKSDREDVRREIKIMQHLSGQPNIVEFRGCYEERLAVHLVMELCAGGELFDRIITKGHYSEKDAAKICREIVNVV HACHFMGIMHRDLKPENFLFDSADELATLKATDFGLSVFTQDGKVYGDMLGSAYYVAPEVLRRSYGKEIDIWSAGVIMYILLTGVPPFWGDNEKGIFDSI LKGHVDFEGEPWPSISESAKDLIRKMLIQDPKKRLTSAQVLEHPWIKGGAASDKPIGSAVVSRIKHFRAMNNMKKLALKVIAANLSEEDIRGLNTVFMNL DTDQSGTITFEELKIGLARLGSKLSETEVKQLMVAADVDGNGTIDYSEFISATMHRYRLEKHEHLYKAFQHFDKDGSGYITREDLTNAMVEYGIGDEANV MDIIDEVDTDHDGRINYDEFCVMMRSGSEVQPLPFPNP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G04720		CPK21	calcium-dependent protein kina...		Lus10020046 [exp]	0	1
AT2G42920			Pentatricopeptide repeat (PPR-...		Lus10012235 [exp]	1.7	0.8804
AT4G04720		CPK21	calcium-dependent protein kina...		Lus10006777 [exp]	2.2	0.8902
AT1G04780			Ankyrin repeat family protein ...		Lus10011743 [exp]	2.4	0.8898
AT1G01580		FRD1, ATFRO2, F...	FERRIC CHELATE REDUCTASE DEFEC...		Lus10027507 [exp]	2.6	0.8555
AT4G03210		XTH9, EXGT-A6, ...	xyloglucan endotransglucosylas...		Lus10039715 [exp]	2.8	0.8693
AT5G59250			Major facilitator superfamily ...		Lus10040772 [exp]	3.0	0.8509
AT5G14370			CCT motif family protein (.1)		Lus10022311 [exp]	3.2	0.8626
AT2G48060			unknown protein		Lus10029972 [exp]	3.5	0.8422
AT5G43140			Peroxisomal membrane 22 kDa (M...		Lus10018700 [exp]	3.9	0.8412
AT4G03210		XTH9, EXGT-A6, ...	xyloglucan endotransglucosylas...		Lus10018503 [exp]	4.9	0.8571

Compare expression of checked genes

Lus10020046 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.