Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61900 458 / 9e-161 unknown protein AT2G30700 279 / 9e-90 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006773 [exp] 639 / 0 AT1G61900 445 / 1e-155 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G003000 [exp] 502 / 1e-177 AT1G61900 521 / 0.0 unknown protein Potri.004G016000 [exp] 493 / 3e-174 AT1G61900 524 / 0.0 unknown protein Potri.007G133800 [exp] 278 / 9e-90 AT2G30700 608 / 0.0 unknown protein Potri.017G018000 [exp] 276 / 1e-88 AT2G30700 614 / 0.0 unknown protein Potri.007G133733 [exp] 160 / 4e-47 AT2G30700 298 / 9e-100 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020048 pacid=23156143 polypeptide=Lus10020048 locus=Lus10020048.g ID=Lus10020048.BGIv1.0 annot-version=v1.0 ATGGCTGTTGCAGGTCTGAAAGAATGTAACTCTATGGATCCTTGGCTGCCGGAGTTATCTCCTAATGGAGCTCCACAGCCATTTCTTCCAACTCTAGCAA CTTCCCCTTCAATCCATTTCACAAAACAAGAATGCATGTTGAACTTTACTGCTGCTGAAACTTTGATGAGCACAACATCCATAGACTGTTCGGCCTTTTT TGCTCCTCTACTAGCTAATGTCATATGTTGTCCTCAGCTGGAAGCCACACTTACCATCCTTATAGGCCAAGCAAGTAAATCCAGCAATTTGCTTGCATTA AGTAGCAATGCGTCAAGGTATTGCCTTTCGGACATTGAACAAATGTTGATCGGTCAGGGTGCTGCGGGCAATCTCAAAAGGATATGCTCCATTCATCATT CTAACCTCACCCAAGGGGCTTGTCCGGTTAAGGATGTGGAGGAATTTGAGAAATCTGTGGAATCATCAAACCTTCTTGCAGCTTGTAAAAATGTTGATCC GGTCAAGGAATGTTGCGAACAGGTTTGTCAAAATGCTATTTCCGAAGCTGCTGCGAAAATCGCAGGAGAAGCGTCTGAAATTTCCACTCTAGATTCTCCT AGTGTCTTACATAGGAACTCGACCAGAATCGGTGATTGCAAAAGTATCGTGTTACGTTGGCTTGCAAGTAAGCTGGATCATTCAAGGGCAAATGAGGTTC TTAGGAGGCTAACCAATTGCAATGTCAATAAAGTTTGCCCTCTGGTTTTCCCTAACATGAAACATGTTGCGAAGGGATGTAGCAGTACAATACATAATCA AACAGAATGTTGTCAGGCGATGGATAGCTACGTGTCTCACTTGCAAAAGCAGAGCCTCATCACTAATCTGCAAGCTTTGGATTGCTCTACTACCCTTGCT ATGAAGCTCCAGAAATCAAATATCACCAGCGATATTTATAGCCTGTGTCACATAAGTCTCAAAGATTTCTCACTCCAAGAATCTGGATGCCTCTTACCAA GTTTGCCATCTGATGCAACTTTTGACCAGTCTTCAGGGATCAGCTTCATCTGTGATCTAAATGACAATATTCCAGCACCATGGCCCTCTTCTTCATCCCA GTTGTCAGCATCACATTGCAACAAAACTATCAAAATCCCGGCACTTCCTGCTGCAGCATCTTCTTCTCAAAATGGTTAG
AA sequence Show only first row Show all	>Lus10020048 pacid=23156143 polypeptide=Lus10020048 locus=Lus10020048.g ID=Lus10020048.BGIv1.0 annot-version=v1.0 MAVAGLKECNSMDPWLPELSPNGAPQPFLPTLATSPSIHFTKQECMLNFTAAETLMSTTSIDCSAFFAPLLANVICCPQLEATLTILIGQASKSSNLLAL SSNASRYCLSDIEQMLIGQGAAGNLKRICSIHHSNLTQGACPVKDVEEFEKSVESSNLLAACKNVDPVKECCEQVCQNAISEAAAKIAGEASEISTLDSP SVLHRNSTRIGDCKSIVLRWLASKLDHSRANEVLRRLTNCNVNKVCPLVFPNMKHVAKGCSSTIHNQTECCQAMDSYVSHLQKQSLITNLQALDCSTTLA MKLQKSNITSDIYSLCHISLKDFSLQESGCLLPSLPSDATFDQSSGISFICDLNDNIPAPWPSSSSQLSASHCNKTIKIPALPAAASSSQNG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G61900			unknown protein		Lus10020048 [exp]	0	1
AT1G61900			unknown protein		Lus10006773 [exp]	1.4	0.8592
AT2G46210		AtSLD2	sphingoid LCB desaturase 2, Fa...		Lus10041083 [exp]	1.7	0.8688
AT5G19980		GONST4	golgi nucleotide sugar transpo...		Lus10017759 [exp]	6.3	0.8419
AT4G13630			Protein of unknown function, D...		Lus10007129 [exp]	6.5	0.8204
AT4G00560			NAD(P)-binding Rossmann-fold s...		Lus10009821 [exp]	8.1	0.7778
AT2G36390		SBE2.1, BE3	BRANCHING ENZYME 3, starch bra...		Lus10014382 [exp]	9.9	0.8572
AT5G67470		ATFH6	ARABIDOPSIS FORMIN HOMOLOG 6, ...		Lus10011524 [exp]	13.4	0.8321
AT2G16430		ATPAP10, PAP10	purple acid phosphatase 10 (.1...		Lus10041959 [exp]	13.6	0.8342
AT1G61350			ARM repeat superfamily protein...		Lus10002598 [exp]	15.4	0.8154
AT3G23940			dehydratase family (.1.2)		Lus10043132 [exp]	15.5	0.8027

Compare expression of checked genes

Lus10020048 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.