Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21690 590 / 0 MATE efflux family protein (.1) AT1G11670 562 / 0 MATE efflux family protein (.1) AT1G61890 553 / 0 MATE efflux family protein (.1) AT4G21910 515 / 4e-180 MATE efflux family protein (.1.2.3.4) AT4G21903 495 / 3e-172 MATE efflux family protein (.1.2) AT5G38030 412 / 9e-140 MATE efflux family protein (.1) AT3G26590 405 / 7e-137 MATE efflux family protein (.1) AT1G12950 397 / 2e-133 RSH2 root hair specific 2 (.1) AT1G47530 392 / 5e-132 MATE efflux family protein (.1) AT3G59030 392 / 8e-132 ATTT12, TT12 TRANSPARENT TESTA 12, A. THALIANA TRANSPARENT TESTA, MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027169 [exp] 592 / 0 AT3G21690 740 / 0.0 MATE efflux family protein (.1) Lus10002067 [exp] 592 / 0 AT3G21690 702 / 0.0 MATE efflux family protein (.1) Lus10001142 [exp] 585 / 0 AT3G21690 712 / 0.0 MATE efflux family protein (.1) Lus10027168 [exp] 537 / 0 AT3G21690 643 / 0.0 MATE efflux family protein (.1) Lus10039673 [exp] 514 / 2e-180 AT4G21910 650 / 0.0 MATE efflux family protein (.1.2.3.4) Lus10036854 [exp] 421 / 8e-143 AT3G26590 666 / 0.0 MATE efflux family protein (.1) Lus10006206 [exp] 417 / 1e-141 AT3G26590 664 / 0.0 MATE efflux family protein (.1) Lus10036851 [exp] 406 / 2e-137 AT3G26590 675 / 0.0 MATE efflux family protein (.1) Lus10006205 [exp] 405 / 6e-137 AT3G26590 686 / 0.0 MATE efflux family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G002600 [exp] 622 / 0 AT3G21690 610 / 0.0 MATE efflux family protein (.1) Potri.011G002800 [exp] 615 / 0 AT3G21690 656 / 0.0 MATE efflux family protein (.1) Potri.011G002200 [exp] 614 / 0 AT1G11670 669 / 0.0 MATE efflux family protein (.1) Potri.004G016400 [exp] 601 / 0 AT3G21690 646 / 0.0 MATE efflux family protein (.1) Potri.011G002700 [exp] 599 / 0 AT3G21690 646 / 0.0 MATE efflux family protein (.1) Potri.014G153100 [exp] 590 / 0 AT3G21690 704 / 0.0 MATE efflux family protein (.1) Potri.011G002900 [exp] 590 / 0 AT3G21690 654 / 0.0 MATE efflux family protein (.1) Potri.011G002500 [exp] 582 / 0 AT3G21690 613 / 0.0 MATE efflux family protein (.1) Potri.011G002400 [exp] 579 / 0 AT3G21690 636 / 0.0 MATE efflux family protein (.1) Potri.019G063500 [exp] 421 / 4e-143 AT3G26590 681 / 0.0 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [flax] [poplar] MviN_MATE PF01554 [flax] [poplar] MatE MatE
Representative CDS sequence Show only first row Show all	>Lus10020049 pacid=23156158 polypeptide=Lus10020049 locus=Lus10020049.g ID=Lus10020049.BGIv1.0 annot-version=v1.0 ATGGACGAAACGGCAGCCAATATTAGTGAAACGCCCACATCATCAACCCATGAAATTAAGTCCACCCATGACGATCCAACTACTACACTTGAACAAGTTC TATCCGACACCCAGTTGTCACACCTCCGTCGACTTCAAAGGGCAACCTCCATCGAGCTTAGAACCCTCTTCCGCCTTGCCGCACCGGCCGTCTTCGTCTA CCTCCTTAACTATCTTGTTTCCATGTCAACCCAAATGCTCTGTGGCCATCTTGGTAACCTTCAGCTTGCCGCCGCCTCTCTCGGCAATGGCGGCATTCAG GTTTTCGCATATGGCCTAATGCTAGGAATGGGAAGTGCAGTGGAAACGCTATGCGGGCAAGCATACGGAGCCAAGAAGTACCAACTCCTAGGCCTATACA CCCAACGATCAACCCTACTCCTCACCCTCACCGGAATCCCACTCGCCATCCTCTACATCTTCTCCAAACCAATCATGATTCTACTTGGCGAGTCCCCGCC TATAGCCTCCGCCGCCGCACTCTTCGTCTACGGCCTCATCCCTCAGATTTTCGCCTACGCCGCCAATTTCCCCATGCAAAAATTCCTACAGTCGCAGAGC ATAGTGTTGCCCAGCGCGTGCATCTCCCTCGCGACCCTCGGGCTTCACCTTCTGCTCAGTTGGGCCGCCATCTATAAGTTTGGGCTGGGCCTGTTGGGCG GGTCGTTGGTACTGAGCTTCTCGTGGTGGATCGTCGTCGCGGGCCAGTTCGCTTACGTAGTGGTGAGCCCACGGTGTAAAGAAACGTGGACCGGGTTTAG CGTGAAGGCCTTCTCGAAGTTGGGCGTGTTCGTGAGACTGTCGGCTGCTTCTGCTGTAATGCTTTGTTTGGAGATATGGTATTTCCAGATTCTTGTCCTC GTCGCTGGGTTACTTCAAAATGCCGAAATTGCCCTTGCTTCGCTCGCCATATGCACAACAATAGCAGGATGGGTGTTGATGGTGTCAGTGGGATTCAACG CAGCTGTGAGTGTAAGGGTGAGCAATGAGATAGGGGCAGGGAATCCGAGGTCAGCGTCGTTTGCTGTGTGGACATCAACGATAACATCATTCATTATAGC TACCGTGTCGGCGGCTGTTGTGCTGTCGTTACGCCACGTCATTAGCTATGCGTTCACCGGCGGCACCACTGTGGCCGCCGCTGTCTCCGAGCTCTGTCCT TTCCTCGCCGCCTCCATTCTGCTCAACGGCGTTCAGCCCGTTTTATCCGGAGTGGCGGTTGGGTGCGGATGGCAAGCGTTTGTGGCGTATGTGAACATCG GATGTTACTACGTAATAGGTCTTCCATTGGGCTGCATTTTAGGGTTCAAGTTTCATATGGGTGTGAAGGGATTATGGGCGGGGATGATTGGTGGCACACT TATGCAAACTCTCATTTTATTATGGGTCACCTATCGTACAGACTGGAACGTTGAGCCTGATGGCCCGATGGGCAACCCGAGGCAACCTGTAATCCGTCCG GTCCGAAATCCGATGAACCCGTAA
AA sequence Show only first row Show all	>Lus10020049 pacid=23156158 polypeptide=Lus10020049 locus=Lus10020049.g ID=Lus10020049.BGIv1.0 annot-version=v1.0 MDETAANISETPTSSTHEIKSTHDDPTTTLEQVLSDTQLSHLRRLQRATSIELRTLFRLAAPAVFVYLLNYLVSMSTQMLCGHLGNLQLAAASLGNGGIQ VFAYGLMLGMGSAVETLCGQAYGAKKYQLLGLYTQRSTLLLTLTGIPLAILYIFSKPIMILLGESPPIASAAALFVYGLIPQIFAYAANFPMQKFLQSQS IVLPSACISLATLGLHLLLSWAAIYKFGLGLLGGSLVLSFSWWIVVAGQFAYVVVSPRCKETWTGFSVKAFSKLGVFVRLSAASAVMLCLEIWYFQILVL VAGLLQNAEIALASLAICTTIAGWVLMVSVGFNAAVSVRVSNEIGAGNPRSASFAVWTSTITSFIIATVSAAVVLSLRHVISYAFTGGTTVAAAVSELCP FLAASILLNGVQPVLSGVAVGCGWQAFVAYVNIGCYYVIGLPLGCILGFKFHMGVKGLWAGMIGGTLMQTLILLWVTYRTDWNVEPDGPMGNPRQPVIRP VRNPMNP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G21690			MATE efflux family protein (.1...		Lus10020049 [exp]	0	1
AT2G25680		MOT1	molybdate transporter 1 (.1)		Lus10019046 [exp]	3.3	0.8031
AT1G01580		FRD1, ATFRO2, F...	FERRIC CHELATE REDUCTASE DEFEC...		Lus10039268 [exp]	5.1	0.8589
AT5G03810			GDSL-like Lipase/Acylhydrolase...		Lus10040791 [exp]	9.3	0.8493
AT3G48360		ATBT2, BT2	BTB and TAZ domain protein 2 (...		Lus10018087 [exp]	10.6	0.8218
AT5G07050			nodulin MtN21 /EamA-like trans...		Lus10041634 [exp]	15.9	0.8520
AT1G01490			Heavy metal transport/detoxifi...		Lus10024670 [exp]	20.1	0.8475
AT2G37740	C2H2ZnF	ATZFP10, ZFP10	zinc-finger protein 10 (.1)		Lus10000705 [exp]	21.2	0.8116
AT2G23110			Late embryogenesis abundant pr...		Lus10029709 [exp]	26.9	0.8387
AT2G23110			Late embryogenesis abundant pr...		Lus10042745 [exp]	28.2	0.8266
					Lus10029617 [exp]	36.6	0.8050

Compare expression of checked genes

Lus10020049 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.