Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04745 56 / 1e-10 unknown protein AT1G11655 52 / 1e-09 unknown protein AT4G21902 49 / 2e-08 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002065 [exp] 57 / 2e-11 AT1G11655 64 / 4e-14 unknown protein Lus10001141 [exp] 54 / 4e-10 AT1G11655 69 / 4e-16 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G002100 [exp] 67 / 2e-15 AT4G04745 58 / 1e-11 unknown protein Potri.004G016800 [exp] 63 / 6e-14 AT4G04745 56 / 6e-11 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020050 pacid=23156169 polypeptide=Lus10020050 locus=Lus10020050.g ID=Lus10020050.BGIv1.0 annot-version=v1.0 ATGGGAAAGAATATTAACCGGCCGTACGGGTACTCCAAGCTGGAAAAAGAAGACCCAGAAGACGTCATCCACCGGCGGGCTCAGTTTCTGATCTACAAAG CACTGCAACAAGCCGAGGAGAATCAAAAGCCTTCCTTCCTCAGAATCAGAATTTCCAAATTGAAGATCAAGATCGGGAAGAAGCTGAGGAAGTGTGCTCT GTTCAGTGTTTCGGCGCAAAGGGTGAGGATCTACAAGCAACTCAGGCTTCTATGGAAGCGGTTGTTTCGCCGGAAACTTGTTGTCGGCGATACCACGGCA GCCGCCGCCGGTCTGCCTGCTTCCATCTTAATTTCGATGTGA
AA sequence Show only first row Show all	>Lus10020050 pacid=23156169 polypeptide=Lus10020050 locus=Lus10020050.g ID=Lus10020050.BGIv1.0 annot-version=v1.0 MGKNINRPYGYSKLEKEDPEDVIHRRAQFLIYKALQQAEENQKPSFLRIRISKLKIKIGKKLRKCALFSVSAQRVRIYKQLRLLWKRLFRRKLVVGDTTA AAAGLPASILISM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11655			unknown protein		Lus10020050 [exp]	0	1
AT5G16490		RIC4	ROP-interactive CRIB motif-con...		Lus10036433 [exp]	2.4	0.9814
AT5G59350			unknown protein		Lus10016568 [exp]	3.3	0.9646
AT5G37478			TPX2 (targeting protein for Xk...		Lus10020800 [exp]	4.0	0.9741
AT1G47530			MATE efflux family protein (.1...		Lus10042343 [exp]	4.6	0.9739
AT5G16490		RIC4	ROP-interactive CRIB motif-con...		Lus10041106 [exp]	8.7	0.9716
AT2G16595			Translocon-associated protein ...		Lus10042391 [exp]	9.2	0.9346
AT5G44030		IRX5, NWS2, CES...	IRREGULAR XYLEM 5, cellulose s...		Lus10008226 [exp]	9.2	0.9701
AT3G50760		GATL2	galacturonosyltransferase-like...		Lus10010790 [exp]	9.5	0.9658
AT1G60810		ACLA-2	ATP-citrate lyase A-2 (.1)		Lus10030592 [exp]	9.9	0.9668
AT5G61340			unknown protein		Lus10034727 [exp]	10.4	0.9686

Compare expression of checked genes

Lus10020050 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.