Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21390 44 / 9e-05 B120 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022194 [exp] 296 / 8e-100 AT3G21540 76 / 8e-15 transducin family protein / WD-40 repeat family protein (.1) Lus10020080 [exp] 84 / 3e-18 AT4G21390 730 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10006742 [exp] 67 / 3e-12 AT4G21390 800 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10007600 [exp] 54 / 6e-08 AT1G11300 930 / 0.0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) Lus10018408 [exp] 53 / 1e-07 AT4G21390 936 / 0.0 S-locus lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G027800 [exp] 61 / 3e-10 AT4G21390 941 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G037600 [exp] 56 / 2e-08 AT4G21390 899 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G027900 [exp] 55 / 3e-08 AT4G21390 915 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G037300 [exp] 52 / 3e-07 AT4G21390 922 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020051 pacid=23156205 polypeptide=Lus10020051 locus=Lus10020051.g ID=Lus10020051.BGIv1.0 annot-version=v1.0 ATGCAAAAAGGAGCTACTTCTGATTGGAGTGTTAAGGAGGTGAGCTATATGTATATTCTGAATGAAGTCATTTATCTCCTTGTTGGGGTTGATCCAGCAA TCATGGCCGTTGATCCAGCTGTTGGTGAAACCCCTTGCAGGCTTGTAGCTGCTCTGAAATTATGCCCTCCCACCATCAAAAGCTCAAGTTGTAGCATAAA TCTTGTGAAATATGGGATCTATGACGAATCGTGTCGGGAATCTCACGTCAGCCTGGAGGTGTTGAGGAGGAATAGTAATCGGATTTCGTGCGATTCGGTC TCGACTCAGCCGTCAGCTGAGTGCCAATCGTACGATTCTGCTTGGAAATCTGGGACCTGTGATGAATTGGGATCTCCCAAGTGTAGGTGGAATTGGTTTG CTGGCTGCTGCAGGATTACACCATTGGTTTGCGCCGGACGAAACGGCTGCAACGAGTTTACAGGGTTCAGAGGTGGGAAGTTGCCTGATTTGGCGAATTT ACGACAACTATGGCTGGAGAAGGATTCGTGCAGGACAGTTCCCTTCACGCGGGTAACAATTGTCATCAGTCCACCAATGGCTACGCAGATGTTGGTCATC AGTCCTGCCCTTTCCACGATTTCACCCATGGTTATTGCTAGAGAGAGTAGATGTATGGAACTTCTGTTAAGGATGTTGTATACCTTCGTACTTGACATAC ACGGGTCACAAGTCGAGAATCAGTTCCGCGGCGAAGCGCGGACAGCCACCCTAGTATTCCATTCAACCCCAGATCCACTGTTAGTTCTACACTAA
AA sequence Show only first row Show all	>Lus10020051 pacid=23156205 polypeptide=Lus10020051 locus=Lus10020051.g ID=Lus10020051.BGIv1.0 annot-version=v1.0 MQKGATSDWSVKEVSYMYILNEVIYLLVGVDPAIMAVDPAVGETPCRLVAALKLCPPTIKSSSCSINLVKYGIYDESCRESHVSLEVLRRNSNRISCDSV STQPSAECQSYDSAWKSGTCDELGSPKCRWNWFAGCCRITPLVCAGRNGCNEFTGFRGGKLPDLANLRQLWLEKDSCRTVPFTRVTIVISPPMATQMLVI SPALSTISPMVIARESRCMELLLRMLYTFVLDIHGSQVENQFRGEARTATLVFHSTPDPLLVLH

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21390		B120	S-locus lectin protein kinase ...		Lus10020051 [exp]	0	1
AT3G06145			unknown protein		Lus10004420 [exp]	5.9	0.8097
AT1G31420		FEI1	FEI 1, Leucine-rich repeat pro...		Lus10034739 [exp]	9.8	0.7787
AT3G60890		ZPR2	LITTLE ZIPPER 2, protein bindi...		Lus10007017 [exp]	10.0	0.8342
AT4G18490			unknown protein		Lus10021779 [exp]	11.1	0.8133
AT4G18260			Cytochrome b561/ferric reducta...		Lus10020757 [exp]	11.6	0.7798
AT5G07370		ATIPK2A, IPK2a	inositol polyphosphate kinase ...		Lus10009397 [exp]	12.2	0.7931
AT4G18260			Cytochrome b561/ferric reducta...		Lus10007333 [exp]	13.4	0.7936
AT3G24315		ATSEC20	Sec20 family protein (.1)		Lus10014461 [exp]	14.1	0.7900
AT3G53850			Uncharacterised protein family...		Lus10010881 [exp]	14.1	0.7697
AT4G35790		ATPLDDELTA	ARABIDOPSIS THALIANA PHOSPHOLI...		Lus10028401 [exp]	14.2	0.8223

Compare expression of checked genes

Lus10020051 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.