Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11340 857 / 0 S-locus lectin protein kinase family protein (.1) AT1G11410 832 / 0 S-locus lectin protein kinase family protein (.1) AT4G21380 707 / 0 ARK3 receptor kinase 3 (.1) AT1G65790 677 / 0 ARK1 receptor kinase 1 (.1) AT4G27290 670 / 0 S-locus lectin protein kinase family protein (.1) AT1G65800 663 / 0 ARK2 receptor kinase 2 (.1) AT1G11330 651 / 0 S-locus lectin protein kinase family protein (.1.2) AT1G61610 642 / 0 S-locus lectin protein kinase family protein (.1) AT4G21390 629 / 0 B120 S-locus lectin protein kinase family protein (.1) AT1G11300 624 / 0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006746 [exp] 1246 / 0 AT1G11340 836 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10006745 [exp] 1123 / 0 AT1G11340 774 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10007611 [exp] 785 / 0 AT1G11340 751 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10024064 [exp] 767 / 0 AT1G11340 735 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10041680 [exp] 715 / 0 AT1G15520 1646 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10018405 [exp] 714 / 0 AT4G21380 952 / 0.0 receptor kinase 3 (.1) Lus10007603 [exp] 707 / 0 AT4G21380 942 / 0.0 receptor kinase 3 (.1) Lus10037865 [exp] 702 / 0 AT4G27300 804 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10018402 [exp] 698 / 0 AT1G11340 691 / 0.0 S-locus lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G028701 [exp] 1022 / 0 AT1G11340 899 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028600 [exp] 1008 / 0 AT1G11340 875 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028466 [exp] 1003 / 0 AT1G11340 884 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G035700 [exp] 785 / 0 AT1G11340 743 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036400 [exp] 764 / 0 AT1G11340 726 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125100 [exp] 754 / 0 AT4G27290 856 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028300 [exp] 753 / 0 AT1G11340 742 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036600 [exp] 752 / 0 AT1G11340 741 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036100 [exp] 746 / 0 AT1G11340 719 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G035800 [exp] 744 / 0 AT1G11340 705 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [flax] [poplar] S_locus_glycop S-locus glycoprotein domain CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0168 [flax] [poplar] PAN PF08276 [flax] [poplar] PAN_2 PAN-like domain CL0168 [flax] [poplar] PF01453 [flax] [poplar] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Lus10020052 pacid=23156125 polypeptide=Lus10020052 locus=Lus10020052.g ID=Lus10020052.BGIv1.0 annot-version=v1.0 ATGAAGCAATTATCGCTCCTTTCAGTGGCCGCTCTCCTTCTTCTCTGTTCATCTCCCTCCTCCTCGTCGGTAAACTCCGACACCATAAACTCAAACAAAC CCCTCAGAGACGGCGACGTTTTGGTCTCCAGCGGCCAAATTTTCGCCCTTGGCTTCTTCTCCCCTGATCAGAAAAACCCAATCCGCAGGTACCTCGGAAT ATGGTACCACATGGTTTCACAGCAAACCGTCGTTTGGGTAGCCAACAGAGACACTCCTCTGAACGACACTTCCGGCCAGCTCACCATCGGTTCAACCGGA AATCTAAACCTCTACGCCGGGAATGGAACTGATAACTCCCCAATTTGGTCGGCCAATTTATCAACTCCGATACAGGGTTCCGTCGTTCAGCTTCTCGATT CGGGGAATCTCGTCCTGTTGGGTGAAGGTACGAGAAACGTACTGTGGCAGAGCTTCGATTACCCAACGGATCACTACTTACCGTTCATGAAATTGGGGTT AGACCGGCGAACCGGGTTGAATCGGATTGCTACGTCATGGAAATCGGAGAATGACCCGGGCACCGGTACAGTTACATATCGAATTGACCCGACCGGTTAC CCTCAGTTGTTTCTGTACAAAAATCACTCGGTTCCCTTATGGAGGGTCGGTCCGTGGACCGGGGTCCGGTGGAGCGGTGTTCCAGAGATGACTCGCAATT TCATTTTCAACGTGAGTTACGTAAACGATGACAAAGAATTGTCTATAATGTACGGAGTCACGGTCGCCTCGATCCTGACAAGGATGTACGTGTTGGAATC GGGGATGGTGAAGAGAGCCACGTGGATCGACCACGACCGTCGATGGAACGAGTTCTGGTACGCTCCTAAAGAAGAGTGTGACATGTACCGCACGTGCGGA CATAACAGCAACTGCGACCCTCGCGACCCGGACGCTTTCCACTGCAAGTGTCTTCCTGGGTTCGAACCCAAGTCCGGCAAGGACTGGTCGCTGAGAGATG GGTCGGGAGGGTGCGTCAGGAAGGCGGGAACGTCCACGTGTCGGAGCGGGGAAGGGTTCGTGAAGGTCGAAAATGTAAAAGTTCCGGACACATCAAGTGC TCACGCGGAGATGACGATGGACTTGAAAGCATGCAAGGAGGAGTGTTTGAGAAACTGTACGTGCGTGGCTTATACGAGTGCCGACGAGAGAGGGATCGGG TGCTTGAGATGGTACGGTGACTTGGTGGACACCAGGAGTTATTCTGGTGGTGGTCAGAGCATCTATGTTAGGGTGGACGCCAAAGTATTCGCTACATACA ACAAGGGGAAATGGCTATTCCATAATTCAGGAATGCTAGCAGTATTCATACTTTCTGTAGCAGTGACTCTATTTCTGGTTATTTCTCTAGTGTATTGCCT CATCAGGAGCTACAGAAAAGATCAAGAGAGATCACTAGACAAACTCTCAGACGTCTATTTCGACAACACGAATCCGGATGCATCCTTGATGAGCCCCGAG AACAGCAAACATCGCAATTCAGATTTACCCTTCTTCCACCTCAGCGAGATAGCTGCCGCTACGAACAATTTCTCCGACGATAACAAGCTTGGAGAAGGTG GCTTTGGATGTGTCTATAAGGGTGAATACAAAGGAAATGAAATAGCAGTGAAAAGGTTATCCAAGTACTCAGGACAAGGAGCTGAGGAATTCAAGAACGA GGTGGAGTTGCTTGCTAAGCTCCAACATAGGAATCTAGTCAAGATTTTGGGTTGCTGCGTGCAAGGAAACGAGAAGATGTTAGTTTACGAGTATTTGCCG AATAAAAGCTTGGACTACTTCATCTTCGATGAAGAAAAAAAGAAGTCGTTATATTGGCCGATCCGGTACAATATTATATGTGGTATAGCTCGAGGGATTT TGTACCTTCATGAAGATTCGCGGCTGAAAATCATACACAGAGATCTAAAAGCCAGCAACGTTCTGCTTGATGCCTCTATGAACCCAAAGATATCAGACTT TGGCATGGCTAGAATCTTCAACGTGAATCAAGACCAAGCCAACACTAACCGTGTGGTCGGTACATATGGTTACATGCCGCCAGAATATGCGATGCAAGGA ATGTTTTCGGTGAAGTCTGATGTATACAGCTTTGGAGTTCTGTTATTAGAGACTGTAACTGGAAGAAAGAACAGCCGTTATTACGAAGAAACTACATCTT CAAGTTTGGTTGGATACACATGGGATCTATGGGAACAAGACAGGGCACTGGAGATGGTGGATTCATCCATGGGAGACTCTTACCCTGCAGAAGGCATACT AAGGTGCATCCAGATAGGTTTGCTCTGCGTTCAAGAATCGCCAACCGACCGGCCAAACATGTTCGAAGTTGTCTTCATGTTGTGCAACATAGAGACGACA ACTCCCCCGACTCCTAGAAAACCAGCGTTCGTACTAAAGGAACGCTATCATAGCGGTACACCGTTGACAAGTACTACTGATGGTGCTTTCTCTGTCAACA ACTTGACCGTCACCATGCTTCAACCTCGATAG
AA sequence Show only first row Show all	>Lus10020052 pacid=23156125 polypeptide=Lus10020052 locus=Lus10020052.g ID=Lus10020052.BGIv1.0 annot-version=v1.0 MKQLSLLSVAALLLLCSSPSSSSVNSDTINSNKPLRDGDVLVSSGQIFALGFFSPDQKNPIRRYLGIWYHMVSQQTVVWVANRDTPLNDTSGQLTIGSTG NLNLYAGNGTDNSPIWSANLSTPIQGSVVQLLDSGNLVLLGEGTRNVLWQSFDYPTDHYLPFMKLGLDRRTGLNRIATSWKSENDPGTGTVTYRIDPTGY PQLFLYKNHSVPLWRVGPWTGVRWSGVPEMTRNFIFNVSYVNDDKELSIMYGVTVASILTRMYVLESGMVKRATWIDHDRRWNEFWYAPKEECDMYRTCG HNSNCDPRDPDAFHCKCLPGFEPKSGKDWSLRDGSGGCVRKAGTSTCRSGEGFVKVENVKVPDTSSAHAEMTMDLKACKEECLRNCTCVAYTSADERGIG CLRWYGDLVDTRSYSGGGQSIYVRVDAKVFATYNKGKWLFHNSGMLAVFILSVAVTLFLVISLVYCLIRSYRKDQERSLDKLSDVYFDNTNPDASLMSPE NSKHRNSDLPFFHLSEIAAATNNFSDDNKLGEGGFGCVYKGEYKGNEIAVKRLSKYSGQGAEEFKNEVELLAKLQHRNLVKILGCCVQGNEKMLVYEYLP NKSLDYFIFDEEKKKSLYWPIRYNIICGIARGILYLHEDSRLKIIHRDLKASNVLLDASMNPKISDFGMARIFNVNQDQANTNRVVGTYGYMPPEYAMQG MFSVKSDVYSFGVLLLETVTGRKNSRYYEETTSSSLVGYTWDLWEQDRALEMVDSSMGDSYPAEGILRCIQIGLLCVQESPTDRPNMFEVVFMLCNIETT TPPTPRKPAFVLKERYHSGTPLTSTTDGAFSVNNLTVTMLQPR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11340			S-locus lectin protein kinase ...		Lus10020052 [exp]	0	1
AT3G21690			MATE efflux family protein (.1...		Lus10027168 [exp]	1.0	0.9615
AT4G29990			Leucine-rich repeat transmembr...		Lus10025849 [exp]	2.0	0.9546
AT1G09310			Protein of unknown function, D...		Lus10031428 [exp]	3.0	0.9494
AT1G54730			Major facilitator superfamily ...		Lus10033815 [exp]	3.9	0.9420
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Lus10002243 [exp]	4.0	0.9286
AT1G01630			Sec14p-like phosphatidylinosit...		Lus10040252 [exp]	7.4	0.9226
AT1G17200			Uncharacterised protein family...		Lus10026196 [exp]	8.4	0.9240
AT1G17200			Uncharacterised protein family...		Lus10042471 [exp]	10.0	0.9455
AT5G64440		ATFAAH	fatty acid amide hydrolase (.1...		Lus10016685 [exp]	11.8	0.9363
AT5G41410	HD	BEL1	BELL 1, POX (plant homeobox) f...		Lus10017513 [exp]	12.0	0.9116

Compare expression of checked genes

Lus10020052 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.