Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04860 407 / 1e-145 DER2.2 DERLIN-2.2 (.1) AT4G21810 398 / 3e-142 DER2.1 DERLIN-2.1 (.1) AT4G29330 145 / 2e-42 DER1 DERLIN-1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006771 [exp] 472 / 2e-171 AT4G04860 437 / 6e-158 DERLIN-2.2 (.1) Lus10018347 [exp] 448 / 7e-162 AT4G04860 446 / 2e-161 DERLIN-2.2 (.1) Lus10007664 [exp] 372 / 2e-132 AT4G04860 375 / 1e-133 DERLIN-2.2 (.1) Lus10034990 [exp] 142 / 5e-41 AT4G29330 347 / 2e-121 DERLIN-1 (.1) Lus10012934 [exp] 137 / 1e-38 AT4G29330 347 / 2e-120 DERLIN-1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G000900 [exp] 425 / 6e-153 AT4G04860 410 / 5e-147 DERLIN-2.2 (.1) Potri.004G018200 [exp] 423 / 4e-152 AT4G04860 410 / 7e-147 DERLIN-2.2 (.1) Potri.006G153000 [exp] 128 / 5e-36 AT4G29330 355 / 7e-125 DERLIN-1 (.1) Potri.004G233200 [exp] 125 / 7e-35 AT4G29330 293 / 4e-100 DERLIN-1 (.1) Potri.004G233100 [exp] 125 / 9e-35 AT4G29330 293 / 8e-100 DERLIN-1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0207 [flax] [poplar] Rhomboid-like PF04511 [flax] [poplar] DER1 Der1-like family
Representative CDS sequence Show only first row Show all	>Lus10020053 pacid=23156255 polypeptide=Lus10020053 locus=Lus10020053.g ID=Lus10020053.BGIv1.0 annot-version=v1.0 ATGGCTCAGGCAGTTGAGGAATGGTACAAGCAGATGCCAGTCGTCACCCGCTCCTACCTCACCGCCGCCGTCGTCACCTCCATCGGCTGTTCCCTCGATA TAATAACTCCTTCCAATTTGTACTTGAACCCGAGGCTTGTAGTTCACAAGTATGAGTTCTGGCGCCTCATCACAAACTTTCTCTACTTCCGGAAAATGGA CTTGGATTTCATGTTTCACATGTTCTTCCTTGCACGGTACTGCAAGCTTCTGGAGGAGAACTCATTCAGAGGAAGAACAGCAGATTTCTTTTATATGCTT CTCTTCGGCGCCTCCGTTTTGACCGGCATTGTTCTCGTGGGTGGGATGATACCTTACATTTCTGAGTCGTTTGCCAAGATAGTGTTCCTCAGCAATTCCT TGACATTCATGATGGTATATGTGTGGAGCAAGCAAAATCCTTTCATTCATATGAGCTTCTTGGGCCTTTTCACTTTCACAGCAGCATATCTACCATGGGT TCTACTAGGATTTTCTGTCCTTGTTGGGGCTAGTGCCTGGGTTGATCTGTTGGGGATGATGGCAGGACACGCATACTACTTTCTTGAAGACGTGTATCCT CGGATGACTGGTCGACACCCCTTGAGAACTCCATCGTTCATTAAAGCCTTGTTTGCAGATGATGATGCTGTCGTCATAGCACGACCAGCAAACGTGAGAT TTGCGCAGCCAGCCGCACCAGAGCTTCACCAAGATCAATGA
AA sequence Show only first row Show all	>Lus10020053 pacid=23156255 polypeptide=Lus10020053 locus=Lus10020053.g ID=Lus10020053.BGIv1.0 annot-version=v1.0 MAQAVEEWYKQMPVVTRSYLTAAVVTSIGCSLDIITPSNLYLNPRLVVHKYEFWRLITNFLYFRKMDLDFMFHMFFLARYCKLLEENSFRGRTADFFYML LFGASVLTGIVLVGGMIPYISESFAKIVFLSNSLTFMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVLVGASAWVDLLGMMAGHAYYFLEDVYP RMTGRHPLRTPSFIKALFADDDAVVIARPANVRFAQPAAPELHQDQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G04860		DER2.2	DERLIN-2.2 (.1)		Lus10020053 [exp]	0	1
AT3G52060			Core-2/I-branching beta-1,6-N-...		Lus10028866 [exp]	4.0	0.8874
AT5G65380			MATE efflux family protein (.1...		Lus10015903 [exp]	4.2	0.8428
AT1G44350		ILL6	IAA-leucine resistant (ILR)-li...		Lus10025668 [exp]	4.6	0.8353
AT3G53620		ATPPA4	pyrophosphorylase 4 (.1)		Lus10025311 [exp]	4.7	0.8623
AT5G08100		ASPGA1	asparaginase A1, N-terminal nu...		Lus10034655 [exp]	5.1	0.8245
AT3G11660		NHL1	NDR1/HIN1-like 1 (.1)		Lus10016960 [exp]	7.1	0.8431
AT1G03900		ABCI18, ATNAP4	ATP-binding cassette I18, non-...		Lus10033908 [exp]	8.5	0.8584
AT3G19240			Vacuolar import/degradation, V...		Lus10014053 [exp]	9.2	0.8029
AT4G18593			dual specificity protein phosp...		Lus10022402 [exp]	10.0	0.8553
AT1G28960		ATNUDX15, ATNUD...	ARABIDOPSIS THALIANA NUDIX HYD...		Lus10015301 [exp]	10.7	0.8074

Compare expression of checked genes

Lus10020053 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.