Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21790 389 / 2e-137 ATTOM1, TOM1 tobamovirus multiplication 1 (.1) AT2G02180 300 / 6e-102 TOM3 tobamovirus multiplication protein 3 (.1) AT1G14530 274 / 6e-92 THH1 TOM THREE HOMOLOG 1, Protein of unknown function (DUF1084) (.1), Protein of unknown function (DUF1084) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006770 [exp] 495 / 4e-179 AT4G21790 463 / 1e-166 tobamovirus multiplication 1 (.1) Lus10007663 [exp] 466 / 2e-167 AT4G21790 464 / 4e-167 tobamovirus multiplication 1 (.1) Lus10018348 [exp] 455 / 3e-163 AT4G21790 462 / 2e-166 tobamovirus multiplication 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G018100 [exp] 424 / 3e-151 AT4G21790 463 / 2e-166 tobamovirus multiplication 1 (.1) Potri.011G001000 [exp] 419 / 4e-149 AT4G21790 427 / 2e-152 tobamovirus multiplication 1 (.1) Potri.010G097900 [exp] 300 / 4e-102 AT2G02180 431 / 1e-153 tobamovirus multiplication protein 3 (.1) Potri.008G144400 [exp] 300 / 5e-102 AT2G02180 425 / 3e-151 tobamovirus multiplication protein 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06454 [flax] [poplar] DUF1084 Protein of unknown function (DUF1084)
Representative CDS sequence Show only first row Show all	>Lus10020054 pacid=23156197 polypeptide=Lus10020054 locus=Lus10020054.g ID=Lus10020054.BGIv1.0 annot-version=v1.0 ATGACGCGGCCGCTGCAACTTCTGTCGCTGCCGGCGATGGAATTCGTCGGACTCGGTGGCAGCTGGTGGAAGGAGATCAACGACTCGACTCAGTGGCAGG ATGGGATTTTCTACTCTCTCTCCGCTGCTTTCTCCCTCGTTTCGCTGATTGCCTTGATTCAATTAATTAGGATTGAATTGAGAGTGCCGGAGTATGGCTG GACAACGCAGAAGGTTTTCCACCTTATGAACTTCATTGTTAACGGAGTACGAGCCCTTGTGTTTGGATTTCACATGCAAGTATTCGGTTTGCATCCCAAG GTTCTGATGTCATTGTCGTTGGATCTCCCGGGGCTTCTATTCTTCTCTACATACACCCTGCTTGTGCTCTTTTGGGCTGAGATATATCATCAGGCAAGGA GTTTGCCAACAGATAAACTGAGGGTTTTCTACATTTCAATAAATAGCGTAATATACTGCATACAGGCTGTCATCTGGGTTTATCTGTGGGTTGACGACAA CAGTGTTGTGGAGATGGTTGGGAAGATATTTGTTGCAGTGGTATCAATTATTGCTGCTTTAGGGTTTTTGCTCTATGGAGGAAGACTCTTTTTCATGCTG AGGCGTTTCCCAATCGAATCCAAAGGCAGAAGGAAGAAGCTTCATGAGGTTGGATCGGTTACAGCAATTTGTTTCACATGCTTCGTCATCCGATGCTCTG TGGTCCTTCTATCTGCCTTTGACGCAGATGCATCTCTTGACGTTCTCGATCACCCAGTCTTGAACTTGATTTACTACTCGTTGGTCGAGATTCTACCCTC TGTGTTGGTGCTCTTCATCCTCCGAAAGCTGCCTCCGAAGCGAGTGTCCGCCCAGTACCATCCAATCCGTTAG
AA sequence Show only first row Show all	>Lus10020054 pacid=23156197 polypeptide=Lus10020054 locus=Lus10020054.g ID=Lus10020054.BGIv1.0 annot-version=v1.0 MTRPLQLLSLPAMEFVGLGGSWWKEINDSTQWQDGIFYSLSAAFSLVSLIALIQLIRIELRVPEYGWTTQKVFHLMNFIVNGVRALVFGFHMQVFGLHPK VLMSLSLDLPGLLFFSTYTLLVLFWAEIYHQARSLPTDKLRVFYISINSVIYCIQAVIWVYLWVDDNSVVEMVGKIFVAVVSIIAALGFLLYGGRLFFML RRFPIESKGRRKKLHEVGSVTAICFTCFVIRCSVVLLSAFDADASLDVLDHPVLNLIYYSLVEILPSVLVLFILRKLPPKRVSAQYHPIR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21790		ATTOM1, TOM1	tobamovirus multiplication 1 (...		Lus10020054 [exp]	0	1
AT3G47990		SIS3	SUGAR-INSENSITIVE 3 (.1)		Lus10042126 [exp]	2.4	0.8908
AT1G65660		SMP1	SWELLMAP 1, Pre-mRNA splicing ...		Lus10028956 [exp]	2.8	0.9041
AT4G12590			Protein of unknown function DU...		Lus10027326 [exp]	3.5	0.8822
AT3G15260			Protein phosphatase 2C family ...		Lus10009210 [exp]	5.7	0.8648
AT1G67170			unknown protein		Lus10019966 [exp]	11.0	0.8658
AT1G67170			unknown protein		Lus10015495 [exp]	18.3	0.8494
AT5G19990		ATSUG1, RPT6A	regulatory particle triple-A A...		Lus10033055 [exp]	18.7	0.8459
AT1G26670		VTI1B, ATVTI12,...	VESICAL TRANSPORT V-SNARE 12, ...		Lus10036788 [exp]	19.2	0.8799
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Lus10021552 [exp]	19.3	0.8610
AT4G01000			Ubiquitin-like superfamily pro...		Lus10012629 [exp]	21.9	0.8455

Compare expression of checked genes

Lus10020054 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.