Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61870 429 / 3e-149 PPR336 pentatricopeptide repeat 336 (.1) AT1G11630 364 / 6e-124 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G80150 177 / 2e-51 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G55890 147 / 2e-40 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G18520 142 / 3e-38 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G36680 141 / 7e-38 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G13150 142 / 3e-37 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G13160 127 / 7e-33 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G39710 125 / 3e-31 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G11690 120 / 1e-29 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006769 [exp] 494 / 8e-177 AT1G61870 326 / 7e-111 pentatricopeptide repeat 336 (.1) Lus10019119 [exp] 170 / 4e-49 AT1G80150 450 / 1e-158 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024724 [exp] 165 / 8e-47 AT1G80150 503 / 6e-179 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10032338 [exp] 163 / 3e-46 AT1G80150 506 / 8e-180 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028054 [exp] 147 / 1e-39 AT1G80150 437 / 8e-152 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10041727 [exp] 131 / 4e-35 AT4G36680 360 / 8e-124 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10007620 [exp] 125 / 3e-32 AT3G13160 298 / 2e-98 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018393 [exp] 125 / 4e-32 AT3G13160 290 / 1e-95 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013841 [exp] 119 / 5e-29 AT5G65560 868 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G018000 [exp] 447 / 1e-156 AT1G61870 421 / 4e-146 pentatricopeptide repeat 336 (.1) Potri.011G001100 [exp] 416 / 2e-144 AT1G61870 419 / 1e-145 pentatricopeptide repeat 336 (.1) Potri.003G062700 [exp] 185 / 2e-54 AT1G80150 541 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G171300 [exp] 172 / 1e-49 AT1G80150 496 / 8e-176 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G030000 [exp] 155 / 2e-43 AT3G13160 287 / 2e-94 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G032500 [exp] 144 / 5e-39 AT3G13160 358 / 9e-122 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G032400 [exp] 137 / 1e-36 AT3G13160 343 / 4e-116 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G028400 [exp] 136 / 4e-36 AT4G36680 477 / 2e-168 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G029900 [exp] 130 / 5e-34 AT3G13160 377 / 1e-129 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G032312 [exp] 130 / 6e-34 AT3G13160 352 / 3e-119 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10020055 pacid=23156176 polypeptide=Lus10020055 locus=Lus10020055.g ID=Lus10020055.BGIv1.0 annot-version=v1.0 ATGGCGTTCTTCTCCCGCCTCCGCAACCAAACCCTAAACCGCCGGAACTTTTCCACGATCCTCTCGCCGGACTCCAAAACCACACTCTCCTCCAAGGAAA AGACCCGCGCCGCACTCGCCCTGCTCAAAGCGGAGAAAAACCCGGAGAAGATCCTTGAGATCTGCCGTGCAGCTTCCCTGACTCCGGAGCTTCATCTAGA CCGAATCGCCTTCTCCGTCGCCGTCTCTAAGCTCTCAGAATCGAACCAGTTCTCCTACATCAAGCAGTTCATCGATGAGCTCCGCCGCGACCGTCCGGAC CTCCGCACGGAGCGATTCGCGGCTCACTCCGTCGTCCTCTTCGGCCAGGCGAATATGCTCGAAGATGCGATCAAAACGTTCAAGGACTACCACAGCAACC TCGATGGCCCTGGCTCGGCGAGGTTGTTGAACGCCCTACTGTTCGCCTGTAACCTGGCAAAGAATTACGGCGAGGTAAAGAGGATCTTCGTCGATTTCCC TAGGATTTATAACATTGAACTGAATTTGGATACATATAACGTAGTTATCAAAGCGTTTACTGAGTCTGGTAGTTCGAGCTCGGTTTATTCGATTCTGGAG GAGATGAAAAGGAACAGAGTGAAACCAAATGCCACCAGCTTCTCGTATTTGCTAGCTGGTCTCTATAAAGAAGAGAAGTTTGAGGACGTAGGGAAAGTTT TGGACTTGATGAACACTGCGTATGGGATGCACCCTGGGCTGAGTACTTACAATGTTAGAATCCAGAGTTTGTGTAAGCTCAGGAGAGTATCGGAGGCAAA GGCTCTGTTCGATAAGATGGTATGCGATGGGCCTAAGCCGAATTCGGTCACGTATACGCAGTTGATTCACGGATTCTGTAACCAAGGGGATTTGGAGGAA GCAAAGAAGTTTTTCAACTCTATGATGCATAGAGGGTACCAACCGGAAAGTGATTGTTATTTCACTTTGATTCATTTCTTGTGTCTGGAAAAGGATTTCG AGTCAGCATTGCAGATTTGCAGAGCGAGCATGGAGAAGAAATGGGTGCCGAATTTTTCGACGATGAAGATATTGGTGAATGGGCTTGCAAGTACTGGAAA GGTTGAAGAGGCTAAGAAGCTTGCGGCGCAAATGAAAGAGAAGTTCCCCAAGACTGTCCATTTGTGGGATGAGGTTGAAGCTGGCTTCCCGCAGTAG
AA sequence Show only first row Show all	>Lus10020055 pacid=23156176 polypeptide=Lus10020055 locus=Lus10020055.g ID=Lus10020055.BGIv1.0 annot-version=v1.0 MAFFSRLRNQTLNRRNFSTILSPDSKTTLSSKEKTRAALALLKAEKNPEKILEICRAASLTPELHLDRIAFSVAVSKLSESNQFSYIKQFIDELRRDRPD LRTERFAAHSVVLFGQANMLEDAIKTFKDYHSNLDGPGSARLLNALLFACNLAKNYGEVKRIFVDFPRIYNIELNLDTYNVVIKAFTESGSSSSVYSILE EMKRNRVKPNATSFSYLLAGLYKEEKFEDVGKVLDLMNTAYGMHPGLSTYNVRIQSLCKLRRVSEAKALFDKMVCDGPKPNSVTYTQLIHGFCNQGDLEE AKKFFNSMMHRGYQPESDCYFTLIHFLCLEKDFESALQICRASMEKKWVPNFSTMKILVNGLASTGKVEEAKKLAAQMKEKFPKTVHLWDEVEAGFPQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G61870		PPR336	pentatricopeptide repeat 336 (...		Lus10020055 [exp]	0	1
AT3G57490			Ribosomal protein S5 family pr...		Lus10027358 [exp]	2.6	0.9736
AT3G09630			Ribosomal protein L4/L1 family...		Lus10026476 [exp]	3.5	0.9724
AT2G04390			Ribosomal S17 family protein (...		Lus10004208 [exp]	4.2	0.9658
AT2G37230			Tetratricopeptide repeat (TPR)...		Lus10034721 [exp]	6.0	0.9512
AT5G48760			Ribosomal protein L13 family p...		Lus10032599 [exp]	8.4	0.9635
AT1G03860		ATPHB2	prohibitin 2 (.1.2.3)		Lus10042515 [exp]	8.8	0.9611
AT1G33140		PGY2	PIGGYBACK2, Ribosomal protein ...		Lus10005286 [exp]	9.2	0.9639
AT5G43960			Nuclear transport factor 2 (NT...		Lus10024953 [exp]	9.9	0.9445
AT3G15000			cobalt ion binding (.1)		Lus10043130 [exp]	10.2	0.9439
AT3G02650			Tetratricopeptide repeat (TPR)...		Lus10013236 [exp]	10.2	0.9539

Compare expression of checked genes

Lus10020055 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.