Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04880 514 / 0 adenosine/AMP deaminase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006768 [exp] 726 / 0 AT4G04880 517 / 0.0 adenosine/AMP deaminase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G000100 [exp] 556 / 0 AT4G04880 544 / 0.0 adenosine/AMP deaminase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0034 [flax] [poplar] Amidohydrolase PF00962 [flax] [poplar] A_deaminase Adenosine/AMP deaminase
Representative CDS sequence Show only first row Show all	>Lus10020056 pacid=23156108 polypeptide=Lus10020056 locus=Lus10020056.g ID=Lus10020056.BGIv1.0 annot-version=v1.0 ATGCAAACCCACCAAAAATCCAAAGCCCCATCATCAGAAGAGGAATGGCGGCAGTGGATTTCACTCCCCAAGGTCGAACTTCACGCCCATCTGAACGGTT CTGTCAGAGCTTCAACTCTCCTAGAATTAGCCAGAAATTTGGGCGAGAAAGGCCGCATTGGCTTCTCGGATGTGGAGCACGTTATACTTAAAGGTGATCG GTCAACGCGCGAAGTCTTCAAGCTGTTTGACTTGATTCATGTCCTCACTACCGACCACAAAACCGTCACAAGGATTACTAAAGAAGTGATTGAAGATTTT GCTGCTGAAAATGTTGTGTATTTGGAGTTGAGAACAACGCCTAAGAGAAATGATTCCATAGGTATGAGCAAGAGGTCATACATGGAAGCTGTAATGGCTG GTTTGAGGGCTGTTACTGAAGTAGATTTGGATTTCGCACCTCATATCAGCAGTGTGGATGGTATAAGTTCTTCAACTTCCATTGCCATGAACAATGGAGA TGGCAGGAAGAGAATATATGTTAGAATTCTCCTCAGCATTGACCGTCGCGAGACAACTGAAGCTGCTATGGATACAGTCAAGCTTGCATTGGAGATGAGA GATTTAGGGGTTGTTGGGATCGACCTTTCGGGAAACCCTATTGTGGGTGAATGGACTACGTTCTTGCCTGCACTGCAATTTGCCCGTCAGCAAGGTCTAT ACATAACGCTTCATTGTGGAGAGGTACCTAACTATGAGGAGGTCAATTCGATGCTCGACTTTCTTCCCCATAGAATCGGCCATGCTTGCTGCTTGGGAGA GCCGGAATGGAGGAAACTGAAATCGTCTAAGATACCGGTTGAGATATGTTTGACATCCAACATAATGACAGACACAATCCCATCACTTGACATTCATCAT TTTGCGGATCTCTACAACGCAAAACATCCCATGGTACTGTGCACCGATGATTCGGGGGTTTTCTCCACCAGTCTTTCAAAGGAGTATAGCCTTGCCTCAT CTGCGTTTGGTCTTGGAAGGAAGGAGCTGTTCCAGCTTGCTAGAGACAGTGTGGAGTTCGTATTTGCTGATGGTTTTGTAAAGCAAGAGTTAAAGGATAT CTTCAGCTCCGCTGCGGATAAGTTCGAGTTATGA
AA sequence Show only first row Show all	>Lus10020056 pacid=23156108 polypeptide=Lus10020056 locus=Lus10020056.g ID=Lus10020056.BGIv1.0 annot-version=v1.0 MQTHQKSKAPSSEEEWRQWISLPKVELHAHLNGSVRASTLLELARNLGEKGRIGFSDVEHVILKGDRSTREVFKLFDLIHVLTTDHKTVTRITKEVIEDF AAENVVYLELRTTPKRNDSIGMSKRSYMEAVMAGLRAVTEVDLDFAPHISSVDGISSSTSIAMNNGDGRKRIYVRILLSIDRRETTEAAMDTVKLALEMR DLGVVGIDLSGNPIVGEWTTFLPALQFARQQGLYITLHCGEVPNYEEVNSMLDFLPHRIGHACCLGEPEWRKLKSSKIPVEICLTSNIMTDTIPSLDIHH FADLYNAKHPMVLCTDDSGVFSTSLSKEYSLASSAFGLGRKELFQLARDSVEFVFADGFVKQELKDIFSSAADKFEL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G04880			adenosine/AMP deaminase family...		Lus10020056 [exp]	0	1
AT4G02580			NADH-ubiquinone oxidoreductase...		Lus10002721 [exp]	1.0	0.8846
AT4G39150			DNAJ heat shock N-terminal dom...		Lus10017472 [exp]	2.8	0.8420
AT3G10540			3-phosphoinositide-dependent p...		Lus10028834 [exp]	3.5	0.8480
AT3G06510		SFR2, ATSFR2	SENSITIVE TO FREEZING 2, Glyco...		Lus10043048 [exp]	4.5	0.8412
AT3G19340			Protein of unknown function (D...		Lus10041512 [exp]	5.3	0.8336
AT1G20080		SYT2, NTMCTYPE1...	synaptotagmin 2, Calcium-depen...		Lus10013563 [exp]	6.2	0.8213
AT1G18640		PSP	3-phosphoserine phosphatase (....		Lus10034686 [exp]	9.4	0.8240
AT3G10350			P-loop containing nucleoside t...		Lus10037982 [exp]	9.9	0.8195
AT3G25680			unknown protein		Lus10021714 [exp]	10.2	0.8140
AT3G10350			P-loop containing nucleoside t...		Lus10038715 [exp]	11.0	0.8323

Compare expression of checked genes

Lus10020056 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.