Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04885 536 / 6e-179 PCFS4 PCF11P-similar protein 4 (.1) AT5G43620 142 / 2e-36 Pre-mRNA cleavage complex II (.1) AT1G66500 142 / 3e-36 C2H2ZnF Pre-mRNA cleavage complex II (.1) AT2G36480 131 / 4e-31 ENTH/VHS family protein (.1.2.3) AT2G36485 54 / 4e-08 ENTH/VHS family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006766 [exp] 1200 / 0 AT4G04885 650 / 0.0 PCF11P-similar protein 4 (.1) Lus10018357 [exp] 738 / 0 AT4G04885 653 / 0.0 PCF11P-similar protein 4 (.1) Lus10007652 [exp] 414 / 5e-131 AT4G04885 343 / 1e-104 PCF11P-similar protein 4 (.1) Lus10014370 [exp] 176 / 4e-45 AT2G36480 248 / 2e-69 ENTH/VHS family protein (.1.2.3) Lus10023867 [exp] 175 / 8e-45 AT2G36480 246 / 2e-68 ENTH/VHS family protein (.1.2.3) Lus10035573 [exp] 168 / 1e-42 AT2G36480 362 / 4e-110 ENTH/VHS family protein (.1.2.3) Lus10027715 [exp] 166 / 9e-42 AT2G36480 363 / 2e-110 ENTH/VHS family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G020300 [exp] 403 / 1e-125 AT4G04885 386 / 9e-120 PCF11P-similar protein 4 (.1) Potri.011G024800 [exp] 380 / 7e-117 AT4G04885 364 / 1e-111 PCF11P-similar protein 4 (.1) Potri.006G115600 [exp] 187 / 7e-49 AT2G36480 268 / 3e-76 ENTH/VHS family protein (.1.2.3) Potri.017G017800 [exp] 154 / 4e-39 AT4G04885 194 / 3e-53 PCF11P-similar protein 4 (.1) Potri.007G134000 [exp] 107 / 3e-24 AT4G04885 101 / 2e-22 PCF11P-similar protein 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF04818 [flax] [poplar] CID CID domain
Representative CDS sequence Show only first row Show all	>Lus10020058 pacid=23156206 polypeptide=Lus10020058 locus=Lus10020058.g ID=Lus10020058.BGIv1.0 annot-version=v1.0 ATGCCTAACGAACACCTGCCTCCGCCACCGCCACCGGCGTCGATACTCGACAGGTTCAGGGCCTTGTTGAAGCAGCAGCAGGCCGGTAGGGTTCGCGGAG ATGACGATGATGATGTGTCGGGAGTTGCAGCCTCATCGGCCTCCGGCGAAGTTGCGCAGCTCTACGAGTTGATGCTCTCGGAATTGACTTTCAACTGCAA GCCTATCATCACTGATTTGACAATCGTCGCCGGGGAACACAGGGAGCATGGAGAAGGAATCGCCGGCGCTATTTGTGCTCGAATTATTGAGGCCCCGGTT GATCAAAAACTGCCTTCTTTATACCTGTTAGACAGTATTGTGAAGAACATTGGCCGTGAGTATGTTAGGTACTTCTCTTCCAGGTTGCCAGAGGTGTTCT GCGAGGCATACAGACAAGTGCATCCTCATGTCCATCCTTCTATGCGGCATCTTTTCAGTACTTGGGCCAATGTATTTCCTCCATCTGCTCTTCGAAAGAT TGAGACCCAACTTCAGTTTTCTCCTTCAGTTGACAATCAATCTTCTAGCTCAACTTCGTTGAGAGCTTCCGAGTCTCCCAGACCAACGCATGGCATACAT GTCAACCCAAAGTACATACGCCAACTGGACCCCTCAACTTCTGAGAAAGATCCATTTATCATTTATGGAGGATTCTTCCACTTCGCTAGCTTAATGCAGT CTGTGGGAGCTCAAAGAATAGACTCTGCTCAAGGTTCAGCTTCTTCATCTTTTGCACTTGGAGCTAAGTTGGTTCCTTCTTCGACTTCCAGGATTGTGAG ACCTTTGTCTCCTGCAGCTGAGAGGCCGTTATATTCAGAACTTAATGACTTTAGGCCATCAAATTCTCCTCAAAGATTTGGTCTTGGCAGAAATGGGGAT GTAAATGAAGAGCCTGATGAATTGAAAAGAAGACACTATTTTGATGATAGAGGAAGTAGATTTGAAACTTCTGCTGCTTACAGAATTAGCAATGGACATG AGCAACTAGGTCCAAGAGCTCTGATAGATGCATATGGGGATGATAGGGGCAAAAGGATTGCAAATAAGAAGCCCCTTCAGCTTGATCATGTCAATGTGTA TGGTAACAGTCACATGATAGGAACGAGAACATGGCAGAATACTGAAGAGGAGGAATTTGAATGGGAGGATATGAGCCCTACTCTGAACAGTCAGAAGATG AATCAGAACATACGCTCTAGGGATTCTCGTGAAGAATTGAATTTGCCTCATTCTCAGTCAACACATCTGCCATATGCTTTGGAATATCTGGCTCCTCTAG GTGATAAAGTCCTAGGTAGTGAAGCGCATCTTATCAACCCTCCATTTGTGTCGTCAAGAATGAGATCAGCAGTTGAGAGCAATATCTCTGGTTTGTCTTC TATAAATGCATCTCAACAGGCAACTTTTCCATCACAGAGGCAAAACACGAATCAGTTAGATGATATAACTGCTAGCAGGGTTGCTACCAATTCAGAGATG TGGATGTCTGGCAACTTGCATGGACACCAACAATATAATAGTTTCGAGAACCAGCAGAATCAGAATAAAATGAATTCAATGTTGCCTCAGTTTCTGACGC ATCAGGATCTTCGGGACAACTTTCCCCGTTCTTCAATGGTTTCAATGCCACCTCAAACCCTTCTACATCCGTCAGGCCACGGGTATCCAATGCAACGGCA AGTCGGTGTAAGGCCACCTATGCCTCCAGGTCCTCCTCCTGCTTCTCAGTTTCTAAGAAGACCGCAAAATAGTGGTCCAGTTATGCCTAATCAACCGCCA ATTGGCGCAATTTCTGGTTTATTTAACTCTCTTATGTCTCAAGGTTTGATCTCATTGACGAACCAGTTACCTGGGCAGGAGTCACTGGGGCTTGAATTTG ACGCTGATCGTCTTAAGGTGCGGCATGAGACTGCAATAACTGCAATGTATGCTGATCTCCCAAGACAGTGCATGACTTGCGGCCTTCGCTTCAAGTGCCA AGAAGAGCACCGCACCCACATGGATTGGCACGTTACTAGGAACCGTATGTCTAAAAGTCGAAAGCAGAAACCTTCTCGCAAGTGGTTTGTTAGTGCGAGT ATGTGGCTCACAGGTGCAGAGGGTTTGGGAACTGATTCTGTTCCTGGATTCTTGCATCTTGAGAATGTCGTGGAGAAGAAAGATGAGGAGGAAGTAGCTG TTCCTGCTGGTGAAGATCAGACTGCATGTGCGTTATGTGGAGAGTCTTTTGAGGATTTCTTTAGTGACGAAACCGAGGAATGGATGTACAAAGGTGCTGT GTATTTAAATGCGCCTCATGGATCTACAGTGGGGGTCGATAGGTCTCAGTTAGGCCCTATAGTGCATGCTAAATGCAGACCCGAAAATAGTGCAGTCCCC ACCGAAGATTTACGGCATGATGAAGGGATAGTTGGACTTGTACCATCCATGCTCACATTTCCAAGAAAAAACAAAGGGATATATTCTCACAATCTCTCTG GACAGGCTCGCTCTTCTGCTGCAGATTTTTCATCTATGAATCTGAAGCCAACTGATCAACTCTTCTGGAATTGA
AA sequence Show only first row Show all	>Lus10020058 pacid=23156206 polypeptide=Lus10020058 locus=Lus10020058.g ID=Lus10020058.BGIv1.0 annot-version=v1.0 MPNEHLPPPPPPASILDRFRALLKQQQAGRVRGDDDDDVSGVAASSASGEVAQLYELMLSELTFNCKPIITDLTIVAGEHREHGEGIAGAICARIIEAPV DQKLPSLYLLDSIVKNIGREYVRYFSSRLPEVFCEAYRQVHPHVHPSMRHLFSTWANVFPPSALRKIETQLQFSPSVDNQSSSSTSLRASESPRPTHGIH VNPKYIRQLDPSTSEKDPFIIYGGFFHFASLMQSVGAQRIDSAQGSASSSFALGAKLVPSSTSRIVRPLSPAAERPLYSELNDFRPSNSPQRFGLGRNGD VNEEPDELKRRHYFDDRGSRFETSAAYRISNGHEQLGPRALIDAYGDDRGKRIANKKPLQLDHVNVYGNSHMIGTRTWQNTEEEEFEWEDMSPTLNSQKM NQNIRSRDSREELNLPHSQSTHLPYALEYLAPLGDKVLGSEAHLINPPFVSSRMRSAVESNISGLSSINASQQATFPSQRQNTNQLDDITASRVATNSEM WMSGNLHGHQQYNSFENQQNQNKMNSMLPQFLTHQDLRDNFPRSSMVSMPPQTLLHPSGHGYPMQRQVGVRPPMPPGPPPASQFLRRPQNSGPVMPNQPP IGAISGLFNSLMSQGLISLTNQLPGQESLGLEFDADRLKVRHETAITAMYADLPRQCMTCGLRFKCQEEHRTHMDWHVTRNRMSKSRKQKPSRKWFVSAS MWLTGAEGLGTDSVPGFLHLENVVEKKDEEEVAVPAGEDQTACALCGESFEDFFSDETEEWMYKGAVYLNAPHGSTVGVDRSQLGPIVHAKCRPENSAVP TEDLRHDEGIVGLVPSMLTFPRKNKGIYSHNLSGQARSSAADFSSMNLKPTDQLFWN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G04885		PCFS4	PCF11P-similar protein 4 (.1)		Lus10020058 [exp]	0	1
AT2G38280		ATAMPD, FAC1	EMBRYONIC FACTOR1, ADENOSINE 5...		Lus10037223 [exp]	8.8	0.7873
AT2G39260			binding;RNA binding (.1)		Lus10023481 [exp]	9.8	0.7678
AT5G58410			HEAT/U-box domain-containing p...		Lus10042236 [exp]	11.6	0.7821
AT4G13070			RNA-binding CRS1 / YhbY (CRM) ...		Lus10040896 [exp]	12.5	0.6755
AT1G74580			Pentatricopeptide repeat (PPR)...		Lus10027267 [exp]	12.8	0.7247
AT5G50970			transducin family protein / WD...		Lus10043205 [exp]	13.6	0.7706
AT3G23900			RNA recognition motif (RRM)-co...		Lus10032590 [exp]	14.9	0.7584
AT5G16260		ELF9	EARLY FLOWERING 9, RNA binding...		Lus10026858 [exp]	18.6	0.7830
AT1G60670			Protein of unknown function (D...		Lus10012911 [exp]	19.4	0.7678
AT4G03000			RING/U-box superfamily protein...		Lus10021954 [exp]	30.6	0.7112

Compare expression of checked genes

Lus10020058 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.