Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54200 61 / 4e-11 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT4G04900 57 / 4e-10 RIC10 ROP-interactive CRIB motif-containing protein 10 (.1) AT4G28556 52 / 4e-08 RIC7 PAK-box/P21-Rho-binding family protein (.1) AT2G20430 50 / 2e-07 RIC6 ROP-interactive CRIB motif-containing protein 6 (.1) AT1G04450 50 / 2e-07 RIC3 ROP-interactive CRIB motif-containing protein 3 (.1) AT1G03982 48 / 6e-07 PAK-box/P21-Rho-binding family protein (.1) AT4G21745 47 / 1e-06 PAK-box/P21-Rho-binding family protein (.1) AT2G33460 47 / 2e-06 RIC1 ROP-interactive CRIB motif-containing protein 1 (.1) AT3G23380 45 / 1e-05 RIC5 ROP-interactive CRIB motif-containing protein 5 (.1) AT4G13270 43 / 5e-05 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006764 [exp] 269 / 2e-92 AT3G54200 79 / 5e-18 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10018361 [exp] 198 / 2e-64 AT3G54200 91 / 1e-22 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10007649 [exp] 195 / 2e-63 AT3G54200 85 / 2e-20 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10006763 [exp] 95 / 3e-24 AT4G04900 81 / 2e-19 ROP-interactive CRIB motif-containing protein 10 (.1) Lus10040941 [exp] 72 / 6e-15 AT3G54200 63 / 1e-11 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10035612 [exp] 71 / 7e-15 AT3G54200 142 / 8e-42 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10007648 [exp] 68 / 6e-14 AT4G04900 88 / 2e-22 ROP-interactive CRIB motif-containing protein 10 (.1) Lus10003238 [exp] 69 / 7e-14 AT3G54200 143 / 3e-42 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10018362 [exp] 67 / 9e-14 AT4G04900 94 / 2e-24 ROP-interactive CRIB motif-containing protein 10 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G025100 [exp] 109 / 1e-29 AT2G46150 77 / 3e-17 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.002G230400 [exp] 87 / 5e-21 AT2G46150 82 / 3e-19 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.016G142300 [exp] 84 / 8e-20 AT3G54200 162 / 3e-50 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.006G112800 [exp] 74 / 7e-16 AT3G54200 159 / 7e-49 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.011G025300 [exp] 62 / 8e-12 AT4G04900 89 / 5e-23 ROP-interactive CRIB motif-containing protein 10 (.1) Potri.004G020650 [exp] 57 / 4e-10 AT4G04900 73 / 1e-16 ROP-interactive CRIB motif-containing protein 10 (.1) Potri.008G168900 [exp] 54 / 1e-08 AT2G33460 101 / 4e-26 ROP-interactive CRIB motif-containing protein 1 (.1) Potri.002G035500 [exp] 54 / 1e-08 AT2G20430 105 / 1e-27 ROP-interactive CRIB motif-containing protein 6 (.1) Potri.005G227500 [exp] 53 / 3e-08 AT4G28556 106 / 5e-28 PAK-box/P21-Rho-binding family protein (.1) Potri.010G069500 [exp] 53 / 4e-08 AT4G28556 99 / 1e-24 PAK-box/P21-Rho-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF03168 [flax] [poplar] LEA_2 Late embryogenesis abundant protein CL0159 [flax] [poplar] PF00786 [flax] [poplar] PBD P21-Rho-binding domain
Representative CDS sequence Show only first row Show all	>Lus10020060 pacid=23156185 polypeptide=Lus10020060 locus=Lus10020060.g ID=Lus10020060.BGIv1.0 annot-version=v1.0 ATGCCCACCGAATCGAGTTCTCAGAGAGAAAAATTAGAAATTGGACGGCCAACCGATGTAAAGCATGTCGCTCACATTGGCTGTGACGGTACTGCAGGAA ATCCACCCAGCTGGATGAGTGGACCTAAGATATCTCCAGAACTTTCATCAGCGGTAAAAGCTTATGGTGGGAGTCCTAATAACAATGGAATCCCTGGGGA TGGGCCTCCCCAGCCGAAGATCACCACCAAATCGGTGACCCTTGACCGAATCGATTACTCCATCTTCCCCAAGCCGTACCTCAACCTCACCCTAAACCTC GTTGTGGAAGTTGAGAACCCAAACTACGGCAACTTCCGCTACGACGACAGCAACGCCTACCTCATGTACCGAGGTGGGCTCGTCGGGGTCTCGCCCATCC CGGCTGGCTACTCCAAGGCCCGGTCCACCGAGGTGATCCGGTCCAATGTCACGCTGATGACGGGTAAGTTTTTGGAGGATGTTGATTTCTACGGGGATTT GATCGACGGGGTTATGAATTTTACCTCTACGTCGTCGTTGCATGGGCAAGCGTCCATGTTTAAGATACTCAAAGCGGAGATCACCAGTAACTGTACGTGT GAGATCTCGGTTCATGTCTCGAGTCAGAAGACAGACTCCACTTGTAAAACCGTCGTCAATCACTGA
AA sequence Show only first row Show all	>Lus10020060 pacid=23156185 polypeptide=Lus10020060 locus=Lus10020060.g ID=Lus10020060.BGIv1.0 annot-version=v1.0 MPTESSSQREKLEIGRPTDVKHVAHIGCDGTAGNPPSWMSGPKISPELSSAVKAYGGSPNNNGIPGDGPPQPKITTKSVTLDRIDYSIFPKPYLNLTLNL VVEVENPNYGNFRYDDSNAYLMYRGGLVGVSPIPAGYSKARSTEVIRSNVTLMTGKFLEDVDFYGDLIDGVMNFTSTSSLHGQASMFKILKAEITSNCTC EISVHVSSQKTDSTCKTVVNH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54200			Late embryogenesis abundant (L...		Lus10020060 [exp]	0	1

Compare expression of checked genes

Lus10020060 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.