Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21215 70 / 1e-14 unknown protein AT4G39900 39 / 0.001 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006757 [exp] 303 / 4e-106 AT4G21215 86 / 6e-21 unknown protein Lus10018373 [exp] 155 / 7e-48 AT4G21215 87 / 3e-21 unknown protein Lus10007639 [exp] 149 / 1e-45 AT4G21215 83 / 1e-19 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G023000 [exp] 124 / 2e-35 AT4G21215 108 / 2e-29 unknown protein Potri.011G026900 [exp] 124 / 2e-35 AT4G21215 91 / 2e-22 unknown protein Potri.008G145000 [exp] 47 / 6e-07 AT4G39900 45 / 3e-06 unknown protein Potri.010G097100 [exp] 47 / 1e-06 AT4G21215 48 / 4e-07 unknown protein Potri.007G093200 [exp] 39 / 0.001 AT4G39900 171 / 9e-53 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020063 pacid=23156244 polypeptide=Lus10020063 locus=Lus10020063.g ID=Lus10020063.BGIv1.0 annot-version=v1.0 ATGGAGATTGCGGATGCTCCAAAGATGGAACTGATGGAGTCTGCACAGAAGATCTCAGTGGTGGATCATATTAACAAATTTCAGTATACACCTGAGACGC CCGATAATTTCGTCATTGACATGGAGGATTTCTCAAACACCACTACCACCACCAGCAAGGAAAGCTACGCCAATTCGAGAATTACATTGCAGAGGAGTGT TTCGAGGAAAGGGTTCATTGGTGATAAGAAGAGCACCAATTCTAACGGCTCTGTGGCTAAAGAGAAGTGTTCTGCAGTTCCGTCACTAAGAGCAGAAGCA TCTTCAGCAGCTTTGGCAGGAGCTAGCACGCCGGAAATGGATCATTCTTCTTGCAATTCCAATGCACAAGGAGGCCATCATCAGATCACCATCACATCTG CTGCTAGCAGCATCAAGGCCACCGCGATCGATGGCCGATGCACCCCCAGAAGGAACAGTTTCAAGAGGTCTCAAGCTTCCTGGCTGCTTGATCCTAGAAA AGTCCTCTTCTTCTTTGCCACACTGTCGAGCATAGGTACATTGTTGCTAATATGCTTCACACTCTCCATCGTCCAGTCAGACGACGCTGCGATTCTCGAG TGA
AA sequence Show only first row Show all	>Lus10020063 pacid=23156244 polypeptide=Lus10020063 locus=Lus10020063.g ID=Lus10020063.BGIv1.0 annot-version=v1.0 MEIADAPKMELMESAQKISVVDHINKFQYTPETPDNFVIDMEDFSNTTTTTSKESYANSRITLQRSVSRKGFIGDKKSTNSNGSVAKEKCSAVPSLRAEA SSAALAGASTPEMDHSSCNSNAQGGHHQITITSAASSIKATAIDGRCTPRRNSFKRSQASWLLDPRKVLFFFATLSSIGTLLLICFTLSIVQSDDAAILE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21215			unknown protein		Lus10020063 [exp]	0	1
AT3G07570			Cytochrome b561/ferric reducta...		Lus10001180 [exp]	5.9	0.8377
AT5G58350		ZIK2, WNK4	with no lysine (K) kinase 4 (....		Lus10042223 [exp]	5.9	0.8622
AT2G43630			unknown protein		Lus10013892 [exp]	13.9	0.8381
AT3G51380		IQD20	IQ-domain 20 (.1)		Lus10041844 [exp]	14.1	0.7775
AT3G14170			Plant protein of unknown funct...		Lus10008137 [exp]	19.5	0.8073
AT2G28410			unknown protein		Lus10021476 [exp]	20.6	0.8530
AT1G52330			Late embryogenesis abundant (L...		Lus10037534 [exp]	25.3	0.8216
AT1G18720			Protein of unknown function (D...		Lus10030447 [exp]	27.5	0.7879
AT4G10770		ATOPT7	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10003217 [exp]	29.0	0.7733
AT1G76250			unknown protein		Lus10016006 [exp]	29.1	0.8416

Compare expression of checked genes

Lus10020063 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.