Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05260 199 / 1e-62 RCI3A, RCI3 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) AT3G01190 197 / 3e-62 Peroxidase superfamily protein (.1) AT5G15180 195 / 4e-61 Peroxidase superfamily protein (.1) AT3G21770 192 / 5e-60 Peroxidase superfamily protein (.1) AT4G11290 191 / 1e-59 Peroxidase superfamily protein (.1) AT1G05250 164 / 4e-49 Peroxidase superfamily protein (.1) AT1G05240 164 / 4e-49 Peroxidase superfamily protein (.1) AT5G51890 157 / 2e-46 Peroxidase superfamily protein (.1) AT2G39040 149 / 5e-43 Peroxidase superfamily protein (.1) AT5G42180 147 / 5e-43 PER64 peroxidase 64, Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006756 [exp] 298 / 7e-102 AT3G01190 379 / 3e-132 Peroxidase superfamily protein (.1) Lus10018374 [exp] 236 / 3e-77 AT3G01190 414 / 4e-146 Peroxidase superfamily protein (.1) Lus10007638 [exp] 229 / 1e-74 AT3G01190 407 / 4e-143 Peroxidase superfamily protein (.1) Lus10027163 [exp] 204 / 1e-64 AT4G11290 491 / 4e-176 Peroxidase superfamily protein (.1) Lus10039681 [exp] 203 / 2e-64 AT4G11290 488 / 3e-175 Peroxidase superfamily protein (.1) Lus10027164 [exp] 194 / 8e-61 AT1G05260 463 / 3e-165 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10039680 [exp] 187 / 3e-58 AT1G05260 458 / 3e-163 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10031548 [exp] 187 / 4e-58 AT1G05260 441 / 1e-156 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10015127 [exp] 185 / 2e-57 AT1G05260 444 / 7e-158 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G023200 [exp] 211 / 2e-67 AT3G01190 404 / 5e-142 Peroxidase superfamily protein (.1) Potri.017G038100 [exp] 211 / 2e-67 AT1G05260 479 / 7e-172 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.011G027300 [exp] 211 / 2e-67 AT3G01190 407 / 2e-143 Peroxidase superfamily protein (.1) Potri.019G063201 [exp] 211 / 2e-67 AT3G01190 412 / 4e-145 Peroxidase superfamily protein (.1) Potri.004G023100 [exp] 209 / 1e-66 AT3G01190 403 / 1e-141 Peroxidase superfamily protein (.1) Potri.007G122100 [exp] 207 / 6e-66 AT1G05260 496 / 3e-178 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.017G037900 [exp] 200 / 4e-63 AT1G05260 481 / 2e-172 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.007G122200 [exp] 199 / 5e-63 AT5G15180 395 / 2e-138 Peroxidase superfamily protein (.1) Potri.007G122351 [exp] 198 / 2e-62 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122401 [exp] 198 / 2e-62 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10020064 pacid=23156235 polypeptide=Lus10020064 locus=Lus10020064.g ID=Lus10020064.BGIv1.0 annot-version=v1.0 ATGGCTGCTTCAAAGGGCTTGTGGCCTCTGTTACTCCTCCAAATTTGCTTCACCTTTACGTCCGCCAACCCACGACAGCTGAAAGTGGGCTACTACGCAA GAACATTCCCAAATGCTGAGAGGCAATCGGCGGTCCTTTGCCTCAGGATGTACTTCCATGATTGCTTCATCAGGGGTTGTGATGCTTCAGTTTTGATAGA TTCGACAAAAGACCGCCGATCTGAAAAGGATGCCTTCGCGAATCTCAGCCTCGGAGGGTTTGGAGTCATCGACCGAGTAAAGGCATCCCTTGAGATGGAG TGTCCAGGCATCGTCTCGTGCTCAGATATCCTAGCCATTGTAGCTAGAGATGTTACGGTCGCGGTATACGAAAGGGCTACGATGGGAAGTGGAGAGAAGG ATATCCATAATGGACGAGGCGCTATTCGGCCATATCCCACAGTCGGCGAATATCTCCTTCTTGACCTCACGCTTCAATGTCGGGCTTTCGATCAAGGACT TTCGATCAAGGACTTGGTTGTGCTACAAGGAAGCCACACCATAGGAATCTCCCATTGCTCTTCCTTCACCAGCAGAATCTACAACTTCTCAGAAAGCAGC GACGTGGACCCTACCCTGGACTCGGAGTATGTACCCAATCTGAGACGGAAATGTAGAACGGCGACGGATCAGACGAAGGTGGTGGAAATGGACCCCGGAA GCCTCAAGACATTTTGA
AA sequence Show only first row Show all	>Lus10020064 pacid=23156235 polypeptide=Lus10020064 locus=Lus10020064.g ID=Lus10020064.BGIv1.0 annot-version=v1.0 MAASKGLWPLLLLQICFTFTSANPRQLKVGYYARTFPNAERQSAVLCLRMYFHDCFIRGCDASVLIDSTKDRRSEKDAFANLSLGGFGVIDRVKASLEME CPGIVSCSDILAIVARDVTVAVYERATMGSGEKDIHNGRGAIRPYPTVGEYLLLDLTLQCRAFDQGLSIKDLVVLQGSHTIGISHCSSFTSRIYNFSESS DVDPTLDSEYVPNLRRKCRTATDQTKVVEMDPGSLKTF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Lus10020064 [exp]	0	1
AT1G69630			F-box/RNI-like superfamily pro...		Lus10011409 [exp]	2.6	0.7269
					Lus10025782 [exp]	6.4	0.7869
AT4G20270		BAM3	BARELY ANY MERISTEM 3, Leucine...		Lus10043327 [exp]	8.6	0.7800
AT3G17220		ATPMEI2	pectin methylesterase inhibito...		Lus10017345 [exp]	12.1	0.7676
AT1G69630			F-box/RNI-like superfamily pro...		Lus10011410 [exp]	13.7	0.7673
AT1G52820			2-oxoglutarate (2OG) and Fe(II...		Lus10005516 [exp]	14.1	0.7156
AT2G04305			Magnesium transporter CorA-lik...		Lus10035643 [exp]	14.7	0.7479
AT3G54140		ATPTR1	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10017176 [exp]	15.0	0.7238
AT3G49780		ATPSK3(FORMERSY...	phytosulfokine 4 precursor (.1...		Lus10011721 [exp]	16.6	0.7463
AT1G09600			Protein kinase superfamily pro...		Lus10028890 [exp]	17.5	0.7074

Compare expression of checked genes

Lus10020064 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.