Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G05220 113 / 3e-31 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT1G61760 104 / 6e-28 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT5G06320 44 / 2e-05 NHL3 NDR1/HIN1-like 3 (.1) AT1G08160 42 / 6e-05 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT2G27260 39 / 0.0008 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006755 [exp] 313 / 2e-110 AT4G05220 145 / 9e-44 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10018376 [exp] 174 / 1e-55 AT4G05220 152 / 3e-46 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10006754 [exp] 114 / 1e-31 AT4G05220 263 / 3e-89 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10020066 [exp] 112 / 6e-31 AT4G05220 261 / 6e-89 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10007636 [exp] 93 / 6e-24 AT4G05220 97 / 2e-25 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10021287 [exp] 44 / 4e-05 AT2G35980 236 / 7e-79 YELLOW-LEAF-SPECIFIC GENE 9, ARABIDOPSIS NDR1/HIN1-LIKE 10, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10016962 [exp] 44 / 4e-05 AT2G35980 237 / 3e-79 YELLOW-LEAF-SPECIFIC GENE 9, ARABIDOPSIS NDR1/HIN1-LIKE 10, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10021288 [exp] 41 / 0.0002 AT2G35980 237 / 2e-79 YELLOW-LEAF-SPECIFIC GENE 9, ARABIDOPSIS NDR1/HIN1-LIKE 10, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G027400 [exp] 117 / 8e-33 AT4G05220 264 / 8e-90 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.004G023300 [exp] 110 / 4e-30 AT4G05220 276 / 7e-95 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.002G180000 [exp] 53 / 8e-09 AT4G01410 232 / 9e-78 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.016G071600 [exp] 46 / 3e-06 AT2G35980 205 / 9e-67 YELLOW-LEAF-SPECIFIC GENE 9, ARABIDOPSIS NDR1/HIN1-LIKE 10, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF03168 [flax] [poplar] LEA_2 Late embryogenesis abundant protein
Representative CDS sequence Show only first row Show all	>Lus10020065 pacid=23156132 polypeptide=Lus10020065 locus=Lus10020065.g ID=Lus10020065.BGIv1.0 annot-version=v1.0 ATGCCCAAACAAACGGACCGACCCACCAAGTTACATATCTCGATCTGCTTCGCAATCCTCTTCTTCATCGGTCTCATCCTTCTAATATGCTGGCTCAGCC TACACCCGCACAAACCCATAATCCACATCCACAGTTTCGCGATCTTGGGCGCTGGTCAAGCTCAAACCAACAGGCTCAAATCGACTCGAATAGTGTACAA TGTATCGGTTCGAAACCCAAATCGGCACGTGTGGATCTCCTACGCCACTTTGACCACGGTCCTGTACCACAACAGGCAGCTGATTGGTTCGACTCCATCG TTTAATTCGTTTGATCAGGAGCCGAAGAACACCTTGTACATCGACCACATGCTGACCGGGGCGGATATTTCGACGAGAGACGGGGATGACCGTTGGATGG ACGTAATGAGCAATGGTGGGCGAGGAAGGGTTGAGTTTGGGTTGGAGTTGAAGTCAAGTTTGAGGTATGAGAGGACAATGTGGGATTTAAGGAGGCATAA TGTTCATGCTAAGTGTGAAGTTCCTGTGGGTAAAGATGGGACTTTATTGCCTGATTATCAGGGAAGGGAATGTTCTTTGTAA
AA sequence Show only first row Show all	>Lus10020065 pacid=23156132 polypeptide=Lus10020065 locus=Lus10020065.g ID=Lus10020065.BGIv1.0 annot-version=v1.0 MPKQTDRPTKLHISICFAILFFIGLILLICWLSLHPHKPIIHIHSFAILGAGQAQTNRLKSTRIVYNVSVRNPNRHVWISYATLTTVLYHNRQLIGSTPS FNSFDQEPKNTLYIDHMLTGADISTRDGDDRWMDVMSNGGRGRVEFGLELKSSLRYERTMWDLRRHNVHAKCEVPVGKDGTLLPDYQGRECSL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G05220			Late embryogenesis abundant (L...		Lus10020065 [exp]	0	1
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Lus10030995 [exp]	4.5	0.8205
AT2G30970		ASP1	aspartate aminotransferase 1 (...		Lus10000181 [exp]	8.5	0.7599
AT4G27290			S-locus lectin protein kinase ...		Lus10014813 [exp]	10.5	0.7791
AT5G22860			Serine carboxypeptidase S28 fa...		Lus10005354 [exp]	12.5	0.7744
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10027146 [exp]	14.1	0.7452
AT5G05340			Peroxidase superfamily protein...		Lus10032786 [exp]	14.4	0.7704
AT2G19590		ATACO1, ACO1	ACC oxidase 1 (.1)		Lus10032683 [exp]	16.9	0.7663
					Lus10021407 [exp]	20.6	0.7596
AT4G28850		ATXTH26, XTH26,...	xyloglucan endotransglucosylas...		Lus10034957 [exp]	20.7	0.7377
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Lus10031033 [exp]	21.5	0.7377

Compare expression of checked genes

Lus10020065 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.