Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G05220 262 / 5e-89 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT1G61760 235 / 2e-78 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT4G01410 84 / 2e-19 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT3G44220 76 / 8e-17 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT2G27080 76 / 1e-16 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2) AT5G22870 70 / 2e-14 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT5G53730 69 / 6e-14 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT5G21130 67 / 3e-13 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT5G22200 66 / 6e-13 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT3G52460 66 / 8e-13 hydroxyproline-rich glycoprotein family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006754 [exp] 458 / 1e-166 AT4G05220 263 / 3e-89 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10018376 [exp] 151 / 8e-46 AT4G05220 152 / 3e-46 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10006755 [exp] 137 / 1e-40 AT4G05220 145 / 9e-44 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10020065 [exp] 132 / 1e-38 AT4G05220 135 / 1e-39 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10007636 [exp] 90 / 2e-22 AT4G05220 97 / 2e-25 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10000157 [exp] 79 / 1e-17 AT3G52470 164 / 3e-51 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10016962 [exp] 68 / 1e-13 AT2G35980 237 / 3e-79 YELLOW-LEAF-SPECIFIC GENE 9, ARABIDOPSIS NDR1/HIN1-LIKE 10, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10021288 [exp] 67 / 2e-13 AT2G35980 237 / 2e-79 YELLOW-LEAF-SPECIFIC GENE 9, ARABIDOPSIS NDR1/HIN1-LIKE 10, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10032932 [exp] 66 / 7e-13 AT5G53730 211 / 4e-69 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G023300 [exp] 284 / 6e-98 AT4G05220 276 / 7e-95 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.011G027400 [exp] 272 / 5e-93 AT4G05220 264 / 8e-90 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.014G106100 [exp] 81 / 2e-18 AT4G01410 185 / 7e-59 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.002G180000 [exp] 76 / 5e-17 AT4G01410 232 / 9e-78 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.006G204000 [exp] 75 / 8e-16 AT3G52460 146 / 4e-42 hydroxyproline-rich glycoprotein family protein (.1) Potri.009G019600 [exp] 73 / 1e-15 AT3G44220 242 / 8e-82 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.016G071600 [exp] 71 / 1e-14 AT2G35980 205 / 9e-67 YELLOW-LEAF-SPECIFIC GENE 9, ARABIDOPSIS NDR1/HIN1-LIKE 10, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.006G204300 [exp] 71 / 1e-14 AT2G35980 208 / 6e-68 YELLOW-LEAF-SPECIFIC GENE 9, ARABIDOPSIS NDR1/HIN1-LIKE 10, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.009G158900 [exp] 69 / 9e-14 AT2G27080 259 / 8e-87 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2) Potri.015G002400 [exp] 67 / 2e-13 AT5G53730 227 / 7e-76 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF03168 [flax] [poplar] LEA_2 Late embryogenesis abundant protein
Representative CDS sequence Show only first row Show all	>Lus10020066 pacid=23156210 polypeptide=Lus10020066 locus=Lus10020066.g ID=Lus10020066.BGIv1.0 annot-version=v1.0 ATGTCGGCTAACAACGGCCGGCTGCCGGTTCACCACGAACCCCGCATCAACAAACCACTCGAGCGCCACCACACCGCTCGATACTATGCCCATCGGGTCA AGGAGAGCCTCACCACTAGGGTCTCAAAGGTCGTATGCTCTGTTTTCTTAACCATTCTTCTCCTTGTTGGCACTGTGGCTTTCGTCATGTGGCTAAGCCT GCGACCGCACCGCCCTAGGTTCTTTATCGAGGAATTTTCAGTTCCGGGTCTTGACCAACCAAACGGGTTCCAAGACGCTCAAGTTAGATTCAATGTCACG GTCCGGAACTCGAACCGGAAGATGGTGTTCCACTACGGGGCGATGCAAGGGTTGGTTTTCTACAAGGATCAGCAGATTGGGTCCGCCCAACTGACCGACG CGTTCGACCAAGAGCCCAAGAGCACGATGATCCTGAACAAGGTCTTGAGTGGGGCTACACTGACGGTGACTAGCCGCCGTTGGGCGGAGGTCCAAGGAGA TCGCTCACTAGGGAAGGTGCCGTTTCGTTTGGACATAACGGCGACCATCATGTTCAAGGTGTCCACGTGGCACAGCGAGAACCATCGGATGCATGCTAAT TGTGATGTCTCCGTTGGCCCCGACGGCTTCATCTTGCCCATGTATAGAACCAAGAGATGTCCAGTTTATTTCACTTGA
AA sequence Show only first row Show all	>Lus10020066 pacid=23156210 polypeptide=Lus10020066 locus=Lus10020066.g ID=Lus10020066.BGIv1.0 annot-version=v1.0 MSANNGRLPVHHEPRINKPLERHHTARYYAHRVKESLTTRVSKVVCSVFLTILLLVGTVAFVMWLSLRPHRPRFFIEEFSVPGLDQPNGFQDAQVRFNVT VRNSNRKMVFHYGAMQGLVFYKDQQIGSAQLTDAFDQEPKSTMILNKVLSGATLTVTSRRWAEVQGDRSLGKVPFRLDITATIMFKVSTWHSENHRMHAN CDVSVGPDGFILPMYRTKRCPVYFT

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G05220			Late embryogenesis abundant (L...		Lus10020066 [exp]	0	1
					Lus10039025 [exp]	4.9	0.8948
AT2G36970			UDP-Glycosyltransferase superf...		Lus10016127 [exp]	8.4	0.8579
AT4G37560			Acetamidase/Formamidase family...		Lus10011528 [exp]	9.5	0.8749
AT1G73390			Endosomal targeting BRO1-like ...		Lus10042289 [exp]	11.2	0.8393
AT3G50520			Phosphoglycerate mutase family...		Lus10014360 [exp]	11.3	0.8541
AT2G01350		QPT	quinolinate phoshoribosyltrans...		Lus10024868 [exp]	12.8	0.8603
AT2G39510			nodulin MtN21 /EamA-like trans...		Lus10040311 [exp]	18.3	0.8398
					Lus10032858 [exp]	21.8	0.8445
AT3G63030		MBD4	methyl-CPG-binding domain 4 (....		Lus10042674 [exp]	24.3	0.8692
AT1G61215		BRD4	bromodomain 4 (.1)		Lus10018457 [exp]	26.6	0.8584

Compare expression of checked genes

Lus10020066 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.