Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21220 343 / 8e-119 AtLpxD2 lipid X D2, Trimeric LpxA-like enzymes superfamily protein (.1) AT4G05210 328 / 8e-113 AtLpxD1 lipid X D1, Trimeric LpxA-like enzymes superfamily protein (.1) AT4G29540 58 / 2e-09 AtLpxA bacterial transferase hexapeptide repeat-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006753 [exp] 99 / 4e-26 AT4G21220 61 / 3e-12 lipid X D2, Trimeric LpxA-like enzymes superfamily protein (.1) Lus10032684 [exp] 64 / 2e-11 AT4G29540 468 / 8e-167 bacterial transferase hexapeptide repeat-containing protein (.1.2) Lus10008565 [exp] 44 / 6e-05 AT4G29540 447 / 6e-158 bacterial transferase hexapeptide repeat-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G039400 [exp] 399 / 2e-141 AT4G21220 359 / 2e-125 lipid X D2, Trimeric LpxA-like enzymes superfamily protein (.1) Potri.006G150200 [exp] 53 / 8e-08 AT4G29540 396 / 3e-138 bacterial transferase hexapeptide repeat-containing protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020067 pacid=23156254 polypeptide=Lus10020067 locus=Lus10020067.g ID=Lus10020067.BGIv1.0 annot-version=v1.0 ATGGCGGCAGTTCAACTCAATAGACTGTGGAAAGTTGGTGGGTTAGGGACTCTTAATCGCCTCACTTCGTTGGAGTCACTTAAAACACCAATTGGAGCTT CTGCTGCCGCTTACCACTCTGGAGATGGTGGTGCGATAAAGCCAGGAGAATACTCGAAATGGGGAAATGGAGGTGGAGTTTTCCACAACTTGGCGTGCAT TGATCCCACTGCAGTTATCGAAGCTGGTGCGGTAGTTCACTCGAGGGCTGTGGTGGGTGCTGATGTTTACATTGGATCAAATGCGGTTGTTGGAACTGAT GTTACCATTGGTGGCTCGACAAAGATAGGGTACAATGTTGCACTTAGCAATTGCTCTATTGGCGAATCGTGTGCGATCCACAACGGAGTGTGCATAGGCC AAGATGGATTTGGCTTCTTTGTGGATGATAAGGGCAACATGGTGAAGAAACCTCAGCTTTTGAATGCAAGGATAGGGAACGATGTTGAGATTGGAGCTAA CAGTTGCATCGACAGGGGCAGTTGGAGAGACACAGTCATTGGTGACCATTCAAAAATAGACAATCTAGTTCAAGTCGCTCATAATGTAGTCATCGGAAGG AGTTGCATTATCTGTGGACAAGTCGGGATCGCAGGATCTGCAACGATCGGGGATTATGTTACGTTAGGAGGACGTGTCGCAATTCGTGACCATGTGTCCA TTGCATCCAAGGTACGACTCGCTGCCAATAGCTGTGTTACAAAGGACATTAAGGAGCCAGGGGATTATGCAGGATTCCCTGCCGTTCCTGCACATGAATG GAGGAGACAAGTTGCAAATCAACGTCGAATTTCGAAGCAAGTGAGTTCCAAATTTTCTACGAACTGA
AA sequence Show only first row Show all	>Lus10020067 pacid=23156254 polypeptide=Lus10020067 locus=Lus10020067.g ID=Lus10020067.BGIv1.0 annot-version=v1.0 MAAVQLNRLWKVGGLGTLNRLTSLESLKTPIGASAAAYHSGDGGAIKPGEYSKWGNGGGVFHNLACIDPTAVIEAGAVVHSRAVVGADVYIGSNAVVGTD VTIGGSTKIGYNVALSNCSIGESCAIHNGVCIGQDGFGFFVDDKGNMVKKPQLLNARIGNDVEIGANSCIDRGSWRDTVIGDHSKIDNLVQVAHNVVIGR SCIICGQVGIAGSATIGDYVTLGGRVAIRDHVSIASKVRLAANSCVTKDIKEPGDYAGFPAVPAHEWRRQVANQRRISKQVSSKFSTN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21220		AtLpxD2	lipid X D2, Trimeric LpxA-like...		Lus10020067 [exp]	0	1
AT2G19260			RING/FYVE/PHD zinc finger supe...		Lus10020162 [exp]	6.7	0.8770
AT4G38240		GNTI, CGL1	N-ACETYLGLUCOSAMINYLTRANSFERAS...		Lus10022994 [exp]	11.7	0.8745
AT5G53530		VPS26A	vacuolar protein sorting 26A (...		Lus10037421 [exp]	15.9	0.8659
AT2G45200		ATGOS12, GOS12	golgi snare 12 (.1.2)		Lus10009285 [exp]	16.0	0.8394
AT5G55810		ATNMNAT	nicotinate/nicotinamide mononu...		Lus10023862 [exp]	17.5	0.8663
AT4G38240		GNTI, CGL1	N-ACETYLGLUCOSAMINYLTRANSFERAS...		Lus10001389 [exp]	19.1	0.8605
AT5G01010			unknown protein		Lus10042743 [exp]	25.8	0.8625
AT3G14910			unknown protein		Lus10011169 [exp]	28.4	0.8277
AT4G04740		CPK23, ATCPK23	calcium-dependent protein kina...		Lus10022624 [exp]	28.7	0.8568
AT3G46590		ATTRP2, TRFL1	TRF-like 1 (.1.2.3)		Lus10016527 [exp]	38.4	0.8556

Compare expression of checked genes

Lus10020067 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.