Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61740 317 / 6e-104 Sulfite exporter TauE/SafE family protein (.1) AT4G21250 301 / 3e-98 Sulfite exporter TauE/SafE family protein (.1) AT1G11540 281 / 1e-91 Sulfite exporter TauE/SafE family protein (.1) AT4G21260 191 / 2e-56 Sulfite exporter TauE/SafE family protein (.1) AT2G25737 107 / 4e-25 Sulfite exporter TauE/SafE family protein (.1) AT2G36630 100 / 1e-22 Sulfite exporter TauE/SafE family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006751 [exp] 127 / 3e-32 AT4G05180 271 / 7e-89 photosystem II subunit Q-2 (.1) Lus10011682 [exp] 100 / 2e-22 AT2G25737 632 / 0.0 Sulfite exporter TauE/SafE family protein (.1) Lus10029813 [exp] 97 / 2e-21 AT2G36630 612 / 0.0 Sulfite exporter TauE/SafE family protein (.1) Lus10020733 [exp] 94 / 1e-20 AT2G36630 611 / 0.0 Sulfite exporter TauE/SafE family protein (.1) Lus10011683 [exp] 78 / 2e-15 AT2G25737 444 / 9e-154 Sulfite exporter TauE/SafE family protein (.1) Lus10014316 [exp] 77 / 8e-15 AT2G25737 536 / 0.0 Sulfite exporter TauE/SafE family protein (.1) Lus10026025 [exp] 75 / 3e-14 AT2G25737 533 / 0.0 Sulfite exporter TauE/SafE family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G030900 [exp] 352 / 8e-118 AT1G61740 413 / 2e-141 Sulfite exporter TauE/SafE family protein (.1) Potri.006G242100 [exp] 108 / 2e-25 AT2G25737 568 / 0.0 Sulfite exporter TauE/SafE family protein (.1) Potri.018G037500 [exp] 102 / 2e-23 AT2G25737 529 / 0.0 Sulfite exporter TauE/SafE family protein (.1) Potri.006G117900 [exp] 101 / 4e-23 AT2G36630 578 / 0.0 Sulfite exporter TauE/SafE family protein (.1) Potri.018G037400 [exp] 101 / 4e-23 AT2G25737 535 / 0.0 Sulfite exporter TauE/SafE family protein (.1) Potri.003G053000 [exp] 101 / 5e-23 AT2G25737 501 / 2e-175 Sulfite exporter TauE/SafE family protein (.1) Potri.001G183300 [exp] 94 / 1e-20 AT2G25737 381 / 2e-128 Sulfite exporter TauE/SafE family protein (.1) Potri.001G182700 [exp] 87 / 3e-18 AT2G25737 428 / 6e-147 Sulfite exporter TauE/SafE family protein (.1) Potri.007G026800 [exp] 87 / 4e-18 AT2G25737 434 / 2e-149 Sulfite exporter TauE/SafE family protein (.1) Potri.001G183400 [exp] 82 / 2e-16 AT2G25737 418 / 5e-143 Sulfite exporter TauE/SafE family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0292 [flax] [poplar] LysE PF01925 [flax] [poplar] TauE Sulfite exporter TauE/SafE
Representative CDS sequence Show only first row Show all	>Lus10020068 pacid=23156229 polypeptide=Lus10020068 locus=Lus10020068.g ID=Lus10020068.BGIv1.0 annot-version=v1.0 ATGTACTCCACCACCACCACCGCCGCCGTCTTGTTCCTCTTCATCTTCTTCCAATCCGCCGCCGCATTATCCACAAACTACCCACCCACGCCACCTCCCA ATGAAGAAAATCCCCATGCGGCGGAGGTGGCGGCGCTGCTGCTCTGTTTCGCGGCCTCCTCGATCTCAAGCGCCGGCGGAATTGGCGGCGGCGGGCTGTT CATCCCCATACTCACCTTAGTCGCCGGTTACGACCTCAGGACGGCGTCCACTCTCTCTGCCTTCATGGTCTCCGCCGGCTCAATCGCCAACGTCATCTGC AGCTTCGCCGCCAAATATGCCGGCGCCGGAGCATCCGCCGGAGGGATCGACTTCGACATCGCACTGCTCTCGGAGCCGATGATGCTGCTGGGAGTGAGCA TCGGGGTAATTTGGAACGTGGTTTTTCCCGAATGGTTGATTACTGCTATGTTCGTCGGGTTTCTTGTCTGGTCGACGGCGGCGACTTGCCTGAATGGGGG TCGGAAGTGGAACTCGGAGACGGAGGAGACAAATCGGAGGACTAATTGCGACACCGGAGAGCTTCTTCTTGGATGGGAGGAAGATTGTGAAGGGAAGAGA GTTGGAGGCGGCGGCGGCGGGGGTGGGTTTCCGTGGATGAAATTGGGGGTTTTGGTAGTGGTGTGGTTTTCTTTCTCTTTGATCTATCTTCTTCGTGGAA ATCGCTATGGCCAGGGTATTATACGAATCAAACCGTGTGGAACCGGATACTGGGCTCTCTCTGCCTTCCAAATCCCTCTATCCATAGTTTTCACGGTTTG GATGTTAATAAGAAGCAACACCCATCAACTTACTAATAAGAACAATGAGGAGGAGGAGGACGATTCACAAGTTTCAGTTAGTACTAAGAGACCAGCTCCT CCCAGCAACTTCATCTTCCCTGTAATGGCACTCCTAGCAGGAATCCTGGGAGGAGTTTTCGGCATTGGAGGTGGAATGCTTATCAGCCCACTCCTTCTCC AAGTTGGGATATCGGCCGAGGTAACAGCAGCAACTTGCTCTTTCATGGTGTTCTTTTCGTCCAGCATGTCGGCCTTTCAGTACCTGATGCTGGGGATGGA TCATACTAATGCTGCCATCGTCCTCTCCGCTACATGTTTCGTAGCCTCGCTTCTCGGATTGCTGGTGGTGCATAGCGCCATTAAGCAATACGGCAGAGCT TCAGTGATAGTCTTCTCGGTTGCAACTGTAATGGCTCTGAGTACAGTTTTTATGACTAGCTTTGGAGCTCTCCAAGTGTGGAGAGATTACCGGGATGGCA ACTACATGGGGTTCAAACCTCCCTGCTGA
AA sequence Show only first row Show all	>Lus10020068 pacid=23156229 polypeptide=Lus10020068 locus=Lus10020068.g ID=Lus10020068.BGIv1.0 annot-version=v1.0 MYSTTTTAAVLFLFIFFQSAAALSTNYPPTPPPNEENPHAAEVAALLLCFAASSISSAGGIGGGGLFIPILTLVAGYDLRTASTLSAFMVSAGSIANVIC SFAAKYAGAGASAGGIDFDIALLSEPMMLLGVSIGVIWNVVFPEWLITAMFVGFLVWSTAATCLNGGRKWNSETEETNRRTNCDTGELLLGWEEDCEGKR VGGGGGGGGFPWMKLGVLVVVWFSFSLIYLLRGNRYGQGIIRIKPCGTGYWALSAFQIPLSIVFTVWMLIRSNTHQLTNKNNEEEEDDSQVSVSTKRPAP PSNFIFPVMALLAGILGGVFGIGGGMLISPLLLQVGISAEVTAATCSFMVFFSSSMSAFQYLMLGMDHTNAAIVLSATCFVASLLGLLVVHSAIKQYGRA SVIVFSVATVMALSTVFMTSFGALQVWRDYRDGNYMGFKPPC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G61740			Sulfite exporter TauE/SafE fam...		Lus10020068 [exp]	0	1
AT2G27080			Late embryogenesis abundant (L...		Lus10026762 [exp]	2.8	0.9041
AT1G32410			Vacuolar protein sorting 55 (V...		Lus10006605 [exp]	3.5	0.8978
AT3G17390		MAT4, SAMS3, MT...	S-ADENOSYLMETHIONINE SYNTHETAS...		Lus10038044 [exp]	4.1	0.9280
AT4G29120			6-phosphogluconate dehydrogena...		Lus10034975 [exp]	7.5	0.8722
AT3G17390		MAT4, SAMS3, MT...	S-ADENOSYLMETHIONINE SYNTHETAS...		Lus10009985 [exp]	10.2	0.9026
AT5G54800		ATGPT1, GPT1	ARABIDOPSIS GLUCOSE 6-PHOSPHAT...		Lus10043060 [exp]	12.2	0.9087
AT3G55830		EPC1	ECTOPICALLY PARTING CELLS, Nuc...		Lus10027392 [exp]	13.4	0.8752
AT1G32790		CID11	CTC-interacting domain 11 (.1....		Lus10008275 [exp]	14.3	0.8582
AT5G64510		TIN1	tunicamycin induced 1, unknown...		Lus10012458 [exp]	14.5	0.8684
AT1G51680		AT4CL1, 4CL.1, ...	ARABIDOPSIS THALIANA 4-COUMARA...		Lus10008677 [exp]	16.9	0.9047

Compare expression of checked genes

Lus10020068 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.