Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54680 221 / 8e-73 bHLH bHLH105, ILR3 iaa-leucine resistant3, basic Helix-Loop-Helix 105, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G51070 211 / 6e-69 bHLH bHLH115 basic Helix-Loop-Helix 115, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT4G14410 164 / 5e-50 bHLH bHLH104 basic Helix-Loop-Helix 104, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT3G23210 164 / 1e-49 bHLH bHLH34, bHLH034 basic Helix-Loop-Helix 34, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G36060 86 / 4e-20 bHLH bHLH11, bHLH011 basic Helix-Loop-Helix 11, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT3G19860 83 / 1e-18 bHLH bHLH121 basic Helix-Loop-Helix 121, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011167 [exp] 203 / 1e-65 AT5G54680 331 / 4e-116 iaa-leucine resistant3, basic Helix-Loop-Helix 105, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10043076 [exp] 198 / 1e-63 AT5G54680 330 / 8e-116 iaa-leucine resistant3, basic Helix-Loop-Helix 105, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10021199 [exp] 179 / 1e-56 AT4G14410 221 / 2e-72 basic Helix-Loop-Helix 104, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10022186 [exp] 176 / 2e-55 AT4G14410 218 / 4e-71 basic Helix-Loop-Helix 104, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10021876 [exp] 164 / 6e-51 AT4G14410 214 / 4e-70 basic Helix-Loop-Helix 104, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10041148 [exp] 160 / 6e-49 AT4G14410 211 / 1e-68 basic Helix-Loop-Helix 104, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10024233 [exp] 68 / 2e-13 AT3G47640 187 / 4e-59 POPEYE, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10041908 [exp] 66 / 1e-12 AT3G19860 224 / 2e-72 basic Helix-Loop-Helix 121, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10028456 [exp] 66 / 1e-12 AT3G19860 225 / 2e-72 basic Helix-Loop-Helix 121, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G031000 [exp] 253 / 2e-85 AT5G54680 264 / 2e-89 iaa-leucine resistant3, basic Helix-Loop-Helix 105, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.004G031800 [exp] 231 / 2e-76 AT5G54680 226 / 8e-75 iaa-leucine resistant3, basic Helix-Loop-Helix 105, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.011G132400 [exp] 196 / 8e-63 AT5G54680 222 / 7e-73 iaa-leucine resistant3, basic Helix-Loop-Helix 105, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G416600 [exp] 194 / 6e-62 AT5G54680 223 / 4e-73 iaa-leucine resistant3, basic Helix-Loop-Helix 105, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.010G072900 [exp] 171 / 2e-53 AT4G14410 230 / 7e-76 basic Helix-Loop-Helix 104, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.008G165700 [exp] 164 / 2e-50 AT4G14410 181 / 1e-56 basic Helix-Loop-Helix 104, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.009G129600 [exp] 86 / 8e-20 AT3G19860 238 / 2e-76 basic Helix-Loop-Helix 121, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.004G168100 [exp] 85 / 3e-19 AT3G19860 250 / 4e-82 basic Helix-Loop-Helix 121, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.005G113400 [exp] 81 / 5e-18 AT3G19860 211 / 1e-66 basic Helix-Loop-Helix 121, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.003G074400 [exp] 60 / 6e-11 AT3G47640 158 / 5e-48 POPEYE, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10020069 pacid=23156258 polypeptide=Lus10020069 locus=Lus10020069.g ID=Lus10020069.BGIv1.0 annot-version=v1.0 ATGGTTTCCCCGGCCGATAATCCCAACTGGGCCTTCGATTACGCCTTGATTGAAGACCTTCCCCTCCCCGGCGGCGAACTTCCTTCCCTTGACCCTCCTC CTCCTCAACCATTCTGGCCTCCTCGCTCCTCTTTCCCTAATTCCGCTTCCTTGAGTGACTCGTCGGAGAACTCGGATTGTTTGAAGGAGAATGGGTCCAG GAAAAGGGTAAAGGTTGGAGCAAGTAATGTGCCTAGCTCCAAAGCATGTAGGGAGAAGATGAGGAGGGAACGACTCAATGACAGGTTCTTGGAGTTGAGT GCTGTTATCGACCCGGGAAGGCCTCCGAAATCGGACAAATCAGCCATCTTGGCCGAAGCTGCTCGAATGGTGACTCAGCTGAGGGGTGAAGCTGATAAAT TGAAGGAGACCAATGCTAGTCTGCAGGAAAAGATCACTGAATTGAAGGCTGAGAAGAGTGAGCTGCGGGACGAAAAGCAGAGGCTGAAGACCGAGAAGGA GCAACTGGAAATGCAAGTGAAGGCTATTAGTAGCCCTCCACAAGGGTATCTGCCTCATCCAGCAATGGCTGCTAAAGTAATACCCTTTGTTGGGTATCCT CAATTCTCAATGTGGCAGTTCATGCCTCCTGCTGCTGTCGATACGTCGCAGGATCATGCCATTCGTCCTCCGGTTGCTTAA
AA sequence Show only first row Show all	>Lus10020069 pacid=23156258 polypeptide=Lus10020069 locus=Lus10020069.g ID=Lus10020069.BGIv1.0 annot-version=v1.0 MVSPADNPNWAFDYALIEDLPLPGGELPSLDPPPPQPFWPPRSSFPNSASLSDSSENSDCLKENGSRKRVKVGASNVPSSKACREKMRRERLNDRFLELS AVIDPGRPPKSDKSAILAEAARMVTQLRGEADKLKETNASLQEKITELKAEKSELRDEKQRLKTEKEQLEMQVKAISSPPQGYLPHPAMAAKVIPFVGYP QFSMWQFMPPAAVDTSQDHAIRPPVA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G54680	bHLH	bHLH105, ILR3	iaa-leucine resistant3, basic ...		Lus10020069 [exp]	0	1
AT1G26910		RPL10B	ribosomal protein L10 B, Ribos...		Lus10003055 [exp]	2.0	0.9011
AT4G21510			F-box family protein (.1)		Lus10018432 [exp]	6.0	0.8848
AT1G48300			unknown protein		Lus10038034 [exp]	11.2	0.9094
AT1G08315			ARM repeat superfamily protein...		Lus10026170 [exp]	11.7	0.8492
AT4G17900			PLATZ transcription factor fam...		Lus10030968 [exp]	13.0	0.9062
AT4G15940			Fumarylacetoacetate (FAA) hydr...		Lus10006496 [exp]	18.8	0.8942
AT4G30360		ATCNGC17	cyclic nucleotide-gated channe...		Lus10023203 [exp]	21.3	0.8780
AT5G48150	GRAS	PAT1	phytochrome a signal transduct...		Lus10003772 [exp]	21.5	0.8563
AT5G48150	GRAS	PAT1	phytochrome a signal transduct...		Lus10016596 [exp]	21.8	0.8769
AT1G17370		UBP1B	oligouridylate binding protein...		Lus10011924 [exp]	23.7	0.8730

Compare expression of checked genes

Lus10020069 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.