Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G05180 259 / 3e-88 PSII-Q, PSBQ, PSBQ-2 photosystem II subunit Q-2 (.1) AT4G21280 243 / 4e-82 PSBQ, PSBQA, PSBQ-1 PHOTOSYSTEM II SUBUNIT Q-1, photosystem II subunit QA (.1.2) AT1G14150 63 / 3e-12 PnsL2, PQL2, PQL1 PsbQ-like 1, Photosynthetic NDH subcomplex L 2, PsbQ-like 2 (.1.2) AT3G01440 63 / 3e-12 PnsL3, PQL2, PQL1 PsbQ-like 2, Photosynthetic NDH subcomplex L 3, PsbQ-like 1 (.1) AT2G01918 58 / 2e-10 PQL3 PsbQ-like 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006751 [exp] 365 / 1e-126 AT4G05180 271 / 7e-89 photosystem II subunit Q-2 (.1) Lus10018385 [exp] 292 / 3e-101 AT4G05180 275 / 3e-94 photosystem II subunit Q-2 (.1) Lus10007627 [exp] 282 / 2e-97 AT4G05180 281 / 7e-97 photosystem II subunit Q-2 (.1) Lus10037159 [exp] 56 / 2e-09 AT1G14150 177 / 6e-57 PsbQ-like 1, Photosynthetic NDH subcomplex L 2, PsbQ-like 2 (.1.2) Lus10004054 [exp] 54 / 2e-09 AT2G01918 89 / 6e-23 PsbQ-like 3 (.1) Lus10002286 [exp] 50 / 1e-07 AT2G01918 90 / 2e-23 PsbQ-like 3 (.1) Lus10036622 [exp] 49 / 8e-07 AT3G01440 237 / 2e-79 PsbQ-like 2, Photosynthetic NDH subcomplex L 3, PsbQ-like 1 (.1) Lus10035839 [exp] 47 / 2e-06 AT3G01440 232 / 2e-77 PsbQ-like 2, Photosynthetic NDH subcomplex L 3, PsbQ-like 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G031500 [exp] 254 / 3e-86 AT4G05180 269 / 1e-91 photosystem II subunit Q-2 (.1) Potri.011G031300 [exp] 247 / 3e-83 AT4G05180 261 / 2e-88 photosystem II subunit Q-2 (.1) Potri.001G416400 [exp] 63 / 5e-12 AT3G01440 230 / 2e-76 PsbQ-like 2, Photosynthetic NDH subcomplex L 3, PsbQ-like 1 (.1) Potri.010G166800 [exp] 59 / 9e-11 AT1G14150 195 / 9e-64 PsbQ-like 1, Photosynthetic NDH subcomplex L 2, PsbQ-like 2 (.1.2) Potri.017G129700 [exp] 59 / 1e-10 AT2G01918 100 / 7e-27 PsbQ-like 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05757 [flax] [poplar] PsbQ Oxygen evolving enhancer protein 3 (PsbQ)
Representative CDS sequence Show only first row Show all	>Lus10020071 pacid=23156142 polypeptide=Lus10020071 locus=Lus10020071.g ID=Lus10020071.BGIv1.0 annot-version=v1.0 ATGTGTGGCTCGACCACCCGATTGAACATAGCTACTACCGCTGGCCGACTACCCGCCGTGGCCCGCCCTAGTCTCACGGTTCGAGCCCAACAGCAGATTG CAGTTGGTGAGACTAGCCGACGGTCCATGATAGGCCTCGTTGCTGTTGGGTTGGCTTCTGGTTCTTTCGCTCAGGCTGTGCTCGCCGAGGCCAATGCAAT CAGGGTTGGACCGCCTCCGCCTCTCTCCGGCGGCCTACCGGGGACGGAGAACTCGGACCAGGCGAGGGACCTGGATTTGCCACTAAAGGAGAGGTTCTAC CTACAGCCACGTACCCCAGAAGAAGCAGCAGCAAGGGTGAAAGTGTCGGCTAACGAGATAGTGAACGTGAAGAGTTTCATCGACAAGAAGGCCTGGCCAT ATGTGATGAACGACCTTCGTCTTAGGGCATCGTATCTTCGCTACGACCTCAAAACCGTGATCTCAGCCAAGCCTAAGCCAGAGAAACAAGCCCTCAACGA CCTCACTGGAAAACTTTTCCAGAGCATCAACAACTTGGATTATGCGGCGAAGATCAAGAACAGTGCTCAGGCAGAGAAGTATTATGCTGAGACTGTATCT AATTTGAATGATGTTCTGGCTAAGATTGGATAG
AA sequence Show only first row Show all	>Lus10020071 pacid=23156142 polypeptide=Lus10020071 locus=Lus10020071.g ID=Lus10020071.BGIv1.0 annot-version=v1.0 MCGSTTRLNIATTAGRLPAVARPSLTVRAQQQIAVGETSRRSMIGLVAVGLASGSFAQAVLAEANAIRVGPPPPLSGGLPGTENSDQARDLDLPLKERFY LQPRTPEEAAARVKVSANEIVNVKSFIDKKAWPYVMNDLRLRASYLRYDLKTVISAKPKPEKQALNDLTGKLFQSINNLDYAAKIKNSAQAEKYYAETVS NLNDVLAKIG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G05180		PSII-Q, PSBQ, P...	photosystem II subunit Q-2 (.1...		Lus10020071 [exp]	0	1
AT4G05180		PSII-Q, PSBQ, P...	photosystem II subunit Q-2 (.1...		Lus10006751 [exp]	1.0	0.9730
AT3G08940		LHCB4.2	light harvesting complex photo...		Lus10035512 [exp]	3.7	0.9221
AT2G23610		ATMES3	ARABIDOPSIS THALIANA METHYL ES...		Lus10005400 [exp]	4.0	0.8958
AT3G56650			Mog1/PsbP/DUF1795-like photosy...		Lus10042812 [exp]	10.5	0.9061
AT4G25080		CHLM	magnesium-protoporphyrin IX me...		Lus10016730 [exp]	11.7	0.9107
AT4G09010		TL29, APX4	thylakoid lumen 29, ascorbate ...		Lus10008718 [exp]	12.2	0.9047
AT4G25080		CHLM	magnesium-protoporphyrin IX me...		Lus10036021 [exp]	13.0	0.9147
AT1G76760		ATY1, TRX-Y1	thioredoxin Y1 (.1)		Lus10028569 [exp]	13.4	0.8952
AT4G10340		LHCB5	light harvesting complex of ph...		Lus10039156 [exp]	15.7	0.8888
AT5G36930			Disease resistance protein (TI...		Lus10018616 [exp]	15.9	0.8734

Compare expression of checked genes

Lus10020071 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.